計算物理学 Rubin H. Landau docker登録その２. docker(53)

計算物理学 Rubin H. Landau 参考文献・docker登録
https://qiita.com/kaizen_nagoya/items/af924f5ac71ff5cc8c89

＜この記事は書きかけです。順次追記します。＞

anaconda公式にgfortran, clangを入れた。
javaがうまく入っていない。

今日のdocker error: java E: Sub-process /usr/bin/dpkg returned an error code (1)
https://qiita.com/kaizen_nagoya/items/d0d890c6bdf455c66087

素のubuntuに最初にjavaを入れ、それからpython, gfortran, clangを入れることにした。

$ docker run -v /Users/administrator/Downloads/work:/home/work  -p 8080:8080  -p 6006:6006 -it  ubuntu  /bin/bash 

# apt update; apt -y upgrade
# apt install -y openjdk-11-jre

...

update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode
Setting up openjdk-11-jre:amd64 (11.0.4+11-1ubuntu2~18.04.3) ...
Processing triggers for libc-bin (2.27-3ubuntu1) ...
Processing triggers for ca-certificates (20180409) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...

done.
done.

# apt install -y python3 gfortran clang
# apt -y install sudo vim wget curl apt-utils
# cd cp
# vi mkall.sh
# chmod +x mkall.sh
# vi wgeturl.sh
# chmod +x wgeturl.sh
# ./mkall
# cd HCPCodes
# gfortran tune.f90
# ./a.out
  1   1.00000   0.30350   1.00000
  2   0.92179   0.05728   0.95690
  3   0.91720   0.01562   0.96664
  4   0.91691   0.00402   0.96348
  5   0.91688   0.00116   0.96414
  6   0.91688   0.00031   0.96391
  7   0.91688   0.00009   0.96397
  8   0.91688   0.00002   0.96395
  9   0.91688   0.00001   0.96395
 10   0.91688   0.00000   0.96395
 11   0.91688   0.00000   0.96395

Tune.pyはpython2みたい。

docker/ubuntu

# curl -kL https://bootstrap.pypa.io/get-pip.py | python
# pip install numpy
# python Tune.py
iter  ener      err 
  1  1.0000000  0.3034969 
  2  0.9217880  0.0572816 
  3  0.9171967  0.0156207 
  4  0.9169062  0.0040152 
  5  0.9168841  0.0011571 
  6  0.9168824  0.0003081 
  7  0.9168823  0.0000879 
  8  0.9168823  0.0000238 
  9  0.9168823  0.0000067 
 10  0.9168823  0.0000018 
 11  0.9168823  0.0000005 
 time =  0:00:00.446073
# python Tune.py
iter  ener      err 
  1  1.0000000  0.3034969 
  2  0.9217880  0.0572816 
  3  0.9171967  0.0156207 
  4  0.9169062  0.0040152 
  5  0.9168841  0.0011571 
  6  0.9168824  0.0003081 
  7  0.9168823  0.0000879 
  8  0.9168823  0.0000238 
  9  0.9168823  0.0000067 
 10  0.9168823  0.0000018 
 11  0.9168823  0.0000005 
 time =  0:00:00.912752
# python Tune4.py
iter      ener           err 
  1  1.0000000000000  0.3034968741713 
  2  0.9217879630894  0.0572816058937 
  3  0.9171967206785  0.0156206559094 
  4  0.9169061568314  0.0040152363071 
  5  0.9168840734364  0.0011570750201 
  6  0.9168824011436  0.0003081087796 
  7  0.9168822729823  0.0000879027426 
  8  0.9168822631487  0.0000238206732 
  9  0.9168822623927  0.0000067257809 
 10  0.9168822623345  0.0000018408264 
 11  0.9168822623301  0.0000005162121 
 time =  0:00:00.374136
press a key to finish
#

次はjava

docker/ubuntu

# javac Tune.java
# java Tune
iter, ener, err 1,  1.0,  0.30349687417131377
iter, ener, err 2,  0.9217879630894489,  0.057281605893659764
iter, ener, err 3,  0.9171967206784624,  0.015620655909443577
iter, ener, err 4,  0.916906156831372,  0.004015236307075396
iter, ener, err 5,  0.916884073436363,  0.001157075020072965
iter, ener, err 6,  0.9168824011436347,  3.081087796206207E-4
iter, ener, err 7,  0.9168822729822912,  8.790274264091292E-5
iter, ener, err 8,  0.916882263148663,  2.3820673234082298E-5
iter, ener, err 9,  0.916882262392699,  6.725780904371186E-6
iter, ener, err 10,  0.9168822623345422,  1.8408264145016992E-6
iter, ener, err 11,  0.9168822623300655,  5.162121422381089E-7
time = 2.579s

# javac Tune4.java
# java Tune4
iter, ener, err 1, 1.0, 0.30349687417131377
iter, ener, err 2, 0.9217879630894491, 0.05728160589365974
iter, ener, err 3, 0.9171967206784624, 0.015620655909443597
iter, ener, err 4, 0.9169061568313721, 0.0040152363070754165
iter, ener, err 5, 0.9168840734363629, 0.0011570750200729687
iter, ener, err 6, 0.9168824011436348, 3.081087796206415E-4
iter, ener, err 7, 0.9168822729822913, 8.790274264093162E-5
iter, ener, err 8, 0.9168822631486631, 2.3820673234143386E-5
iter, ener, err 9, 0.916882262392699, 6.725780904342688E-6
iter, ener, err 10, 0.9168822623345422, 1.8408264144934328E-6
iter, ener, err 11, 0.9168822623300655, 5.162121422150938E-7
time = 1.506s

# apt install -y openjdk-11-jdk
# javac Tune.java
# java Tune
iter, ener, err 1,  1.0,  0.30349687417131377
iter, ener, err 2,  0.9217879630894489,  0.057281605893659764
iter, ener, err 3,  0.9171967206784624,  0.015620655909443577
iter, ener, err 4,  0.916906156831372,  0.004015236307075396
iter, ener, err 5,  0.916884073436363,  0.001157075020072965
iter, ener, err 6,  0.9168824011436347,  3.081087796206207E-4
iter, ener, err 7,  0.9168822729822912,  8.790274264091292E-5
iter, ener, err 8,  0.916882263148663,  2.3820673234082298E-5
iter, ener, err 9,  0.916882262392699,  6.725780904371186E-6
iter, ener, err 10,  0.9168822623345422,  1.8408264145016992E-6
iter, ener, err 11,  0.9168822623300655,  5.162121422381089E-7
time = 2.141s

#docke hub登録

$ docker commit 9daf9f75e132 kaizenjapan/comp-physics
sha256:d00b10f37173deadf85a7efa7f81468a9e57f738577108fdeb26b556e9ab7035

$ docker push kaizenjapan/comp-physics
The push refers to repository [docker.io/kaizenjapan/comp-physics]
62cfff8524f5: Pushed 
b079b3fa8d1b: Mounted from kaizenjapan/fortran 
a31dbd3063d7: Mounted from kaizenjapan/fortran 
c56e09e1bd18: Mounted from kaizenjapan/fortran 
543791078bdb: Mounted from kaizenjapan/fortran 
latest: digest: sha256:2a92ae0b0140faaea823f7b46fa9a7e1e16c85c1e73d5fd9022e56e1cbbf684f size: 1365

利用方法

$ docker run -v /Users/administrator/Downloads/work:/home/work  -p 8080:8080  -it  kaizenjapan/comp-physics  /bin/bash 

administratorは、ユーザ名。Downloadsの下にworkがあることが前提。
host OSで作成したファイルを置いておけば、そのままdocker でも利用できる。

docker hubに登録する際には、別のフォルダにcpしてからpushする。

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＜この記事は個人の過去の経験に基づく個人の感想です。現在所属する組織、業務とは関係がありません。＞
This article is an individual impression based on the individual's experience. It has nothing to do with the organization or business to which I currently belong.

文書履歴(document history)

ver. 0.01初稿　20190808
ver. 0.02 ありがとう追記　20230527

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