There are some issue to make a reference list from biorxiv pdf file.

Unnecessary line breaks are inserted, even in a URL.

Remove unnecessary line breaks.
Insert a space or not depending a context.

A - is added to the end of a line to split a word.

Remove - and line breaks, if it is a one word.

Put a space between words.　

Remove unnecessary page headings, footings and page numbers.

Search for a valid URL.

Search for a URL with full text.

Genome modeling and design across all domains of life with evo 2
https://qiita.com/kaizen_nagoya/items/eecda74f758008633ee2

BIOREASON: DNA-LLMモデルによるマルチモーダル生物学的推論の動機付け
https://qiita.com/kaizen_nagoya/items/0718b214043a614deee0

Genomic language models: Opportunities and challenges
https://qiita.com/kaizen_nagoya/items/f797330e64e0c7d05f39

A dna language model based on multispecies alignment predicts the effects of genome-wide variants
https://qiita.com/kaizen_nagoya/items/6e8858c2395dcc98804a