Lizt-2:fastx_toolkit-0.0.14 suimye$ ./configure --prefix=/Users/suimye/tools/
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... config/install-sh -c -d
checking for gawk... no
checking for mawk... no
checking for nawk... no
checking for awk... awk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking for style of include used by make... GNU
checking dependency style of gcc... gcc3
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... gcc3
checking build system type... i386-apple-darwin13.4.0
checking host system type... i386-apple-darwin13.4.0
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /opt/local/bin/grep
checking for egrep... /opt/local/bin/grep -E
checking for fgrep... /opt/local/bin/grep -F
checking for ld used by gcc... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld
checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no
checking for BSD- or MS-compatible name lister (nm)... /opt/local/bin/nm
checking the name lister (/opt/local/bin/nm) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 196608
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld option to reload object files... -r
checking for objdump... no
checking how to recognize dependent libraries... pass_all
checking for ar... ar
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /opt/local/bin/nm output from gcc object... ok
checking for dsymutil... dsymutil
checking for nmedit... nmedit
checking for lipo... lipo
checking for otool... otool
checking for otool64... no
checking for -single_module linker flag... yes
checking for -exported_symbols_list linker flag... yes
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
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checking for unistd.h... yes
checking for dlfcn.h... yes
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether g++ accepts -g... (cached) yes
checking dependency style of g++... (cached) gcc3
checking how to run the C++ preprocessor... g++ -E
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... yes
checking for gcc option to produce PIC... -fno-common -DPIC
checking if gcc PIC flag -fno-common -DPIC works... yes
checking if gcc static flag -static works... no
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checking whether the gcc linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... darwin13.4.0 dyld
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for ld used by g++... /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld
checking if the linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) is GNU ld... no
checking whether the g++ linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fno-common -DPIC
checking if g++ PIC flag -fno-common -DPIC works... yes
checking if g++ static flag -static works... no
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... darwin13.4.0 dyld
checking how to hardcode library paths into programs... immediate
checking for long long int... yes
checking for ISO C++ TR1 include files... no
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checking whether g++ supports C++11 features with -std=c++11... yes
checking for pkg-config... /opt/local/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for GTEXTUTILS... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating doc/Makefile
config.status: creating m4/Makefile
config.status: creating src/Makefile
config.status: creating src/libfastx/Makefile
config.status: creating src/fastx_clipper/Makefile
config.status: creating src/fastq_to_fasta/Makefile
config.status: creating src/fastx_quality_stats/Makefile
config.status: creating src/fastq_quality_converter/Makefile
config.status: creating src/fastx_trimmer/Makefile
config.status: creating src/fastq_quality_filter/Makefile
config.status: creating src/fastq_quality_trimmer/Makefile
config.status: creating src/fastx_artifacts_filter/Makefile
config.status: creating src/fastx_reverse_complement/Makefile
config.status: creating src/fastx_collapser/Makefile
config.status: creating src/fastx_uncollapser/Makefile
config.status: creating src/seqalign_test/Makefile
config.status: creating src/fasta_formatter/Makefile
config.status: creating src/fasta_nucleotide_changer/Makefile
config.status: creating src/fastx_renamer/Makefile
config.status: creating src/fastq_masker/Makefile
config.status: creating galaxy/Makefile
config.status: creating galaxy/tools/Makefile
config.status: creating galaxy/tools/fastx_toolkit/Makefile
config.status: creating galaxy/test-data/Makefile
config.status: creating galaxy/static/Makefile
config.status: creating galaxy/static/fastx_icons/Makefile
config.status: creating galaxy/tool-data/Makefile
config.status: creating scripts/Makefile
config.status: creating build_scripts/Makefile
config.status: creating config.h
config.status: config.h is unchanged
config.status: executing depfiles commands
config.status: executing libtool commands
Lizt-2:fastx_toolkit-0.0.14 suimye$ make install
Making install in m4
make[2]: Nothing to be done for `install-exec-am'.
../config/install-sh -c -d '/Users/suimye/tools/share/aclocal'
/usr/bin/install -c -m 644 ax_c_long_long.m4 ax_cxx_compile_stdcxx_11.m4 ax_cxx_header_stdcxx_tr1.m4 '/Users/suimye/tools/share/aclocal'
Making install in src
Making install in libfastx
gcc -DHAVE_CONFIG_H -I. -I../.. -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -MT chomp.o -MD -MP -MF .deps/chomp.Tpo -c -o chomp.o chomp.c
mv -f .deps/chomp.Tpo .deps/chomp.Po
gcc -DHAVE_CONFIG_H -I. -I../.. -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -MT fastx.o -MD -MP -MF .deps/fastx.Tpo -c -o fastx.o fastx.c
mv -f .deps/fastx.Tpo .deps/fastx.Po
gcc -DHAVE_CONFIG_H -I. -I../.. -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -MT fastx_args.o -MD -MP -MF .deps/fastx_args.Tpo -c -o fastx_args.o fastx_args.c
mv -f .deps/fastx_args.Tpo .deps/fastx_args.Po
g++ -DHAVE_CONFIG_H -I. -I../.. -g -O2 -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -MT sequence_alignment.o -MD -MP -MF .deps/sequence_alignment.Tpo -c -o sequence_alignment.o sequence_alignment.cpp
mv -f .deps/sequence_alignment.Tpo .deps/sequence_alignment.Po
rm -f libfastx.a
ar cru libfastx.a chomp.o fastx.o fastx_args.o sequence_alignment.o
ranlib libfastx.a
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
Making install in fastx_clipper
g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -g -O2 -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -MT fastx_clipper.o -MD -MP -MF .deps/fastx_clipper.Tpo -c -o fastx_clipper.o fastx_clipper.cpp
mv -f .deps/fastx_clipper.Tpo .deps/fastx_clipper.Po
/bin/sh ../../libtool --tag=CXX --mode=link g++ -g -O2 -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastx_clipper fastx_clipper.o ../libfastx/libfastx.a
libtool: link: g++ -g -O2 -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastx_clipper fastx_clipper.o -Wl,-bind_at_load ../libfastx/libfastx.a
../../config/install-sh -c -d '/Users/suimye/tools/bin'
/bin/sh ../../libtool --mode=install /usr/bin/install -c fastx_clipper '/Users/suimye/tools/bin'
libtool: install: /usr/bin/install -c fastx_clipper /Users/suimye/tools/bin/fastx_clipper
make[3]: Nothing to be done for `install-data-am'.
Making install in fastx_trimmer
gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -MT fastx_trimmer.o -MD -MP -MF .deps/fastx_trimmer.Tpo -c -o fastx_trimmer.o fastx_trimmer.c
mv -f .deps/fastx_trimmer.Tpo .deps/fastx_trimmer.Po
/bin/sh ../../libtool --tag=CC --mode=link gcc -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastx_trimmer fastx_trimmer.o ../libfastx/libfastx.a
libtool: link: gcc -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastx_trimmer fastx_trimmer.o ../libfastx/libfastx.a
../../config/install-sh -c -d '/Users/suimye/tools/bin'
/bin/sh ../../libtool --mode=install /usr/bin/install -c fastx_trimmer '/Users/suimye/tools/bin'
libtool: install: /usr/bin/install -c fastx_trimmer /Users/suimye/tools/bin/fastx_trimmer
make[3]: Nothing to be done for `install-data-am'.
Making install in fastx_quality_stats
gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -MT fastx_quality_stats.o -MD -MP -MF .deps/fastx_quality_stats.Tpo -c -o fastx_quality_stats.o fastx_quality_stats.c
mv -f .deps/fastx_quality_stats.Tpo .deps/fastx_quality_stats.Po
/bin/sh ../../libtool --tag=CC --mode=link gcc -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastx_quality_stats fastx_quality_stats.o ../libfastx/libfastx.a
libtool: link: gcc -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastx_quality_stats fastx_quality_stats.o ../libfastx/libfastx.a
../../config/install-sh -c -d '/Users/suimye/tools/bin'
/bin/sh ../../libtool --mode=install /usr/bin/install -c fastx_quality_stats '/Users/suimye/tools/bin'
libtool: install: /usr/bin/install -c fastx_quality_stats /Users/suimye/tools/bin/fastx_quality_stats
make[3]: Nothing to be done for `install-data-am'.
Making install in fastq_quality_converter
gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -MT fastq_quality_converter.o -MD -MP -MF .deps/fastq_quality_converter.Tpo -c -o fastq_quality_converter.o fastq_quality_converter.c
mv -f .deps/fastq_quality_converter.Tpo .deps/fastq_quality_converter.Po
/bin/sh ../../libtool --tag=CC --mode=link gcc -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastq_quality_converter fastq_quality_converter.o ../libfastx/libfastx.a
libtool: link: gcc -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastq_quality_converter fastq_quality_converter.o ../libfastx/libfastx.a
../../config/install-sh -c -d '/Users/suimye/tools/bin'
/bin/sh ../../libtool --mode=install /usr/bin/install -c fastq_quality_converter '/Users/suimye/tools/bin'
libtool: install: /usr/bin/install -c fastq_quality_converter /Users/suimye/tools/bin/fastq_quality_converter
make[3]: Nothing to be done for `install-data-am'.
Making install in fastq_to_fasta
gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -MT fastq_to_fasta.o -MD -MP -MF .deps/fastq_to_fasta.Tpo -c -o fastq_to_fasta.o fastq_to_fasta.c
mv -f .deps/fastq_to_fasta.Tpo .deps/fastq_to_fasta.Po
/bin/sh ../../libtool --tag=CC --mode=link gcc -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastq_to_fasta fastq_to_fasta.o ../libfastx/libfastx.a
libtool: link: gcc -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastq_to_fasta fastq_to_fasta.o ../libfastx/libfastx.a
../../config/install-sh -c -d '/Users/suimye/tools/bin'
/bin/sh ../../libtool --mode=install /usr/bin/install -c fastq_to_fasta '/Users/suimye/tools/bin'
libtool: install: /usr/bin/install -c fastq_to_fasta /Users/suimye/tools/bin/fastq_to_fasta
make[3]: Nothing to be done for `install-data-am'.
Making install in fastq_quality_filter
gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -MT fastq_quality_filter.o -MD -MP -MF .deps/fastq_quality_filter.Tpo -c -o fastq_quality_filter.o fastq_quality_filter.c
mv -f .deps/fastq_quality_filter.Tpo .deps/fastq_quality_filter.Po
/bin/sh ../../libtool --tag=CC --mode=link gcc -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastq_quality_filter fastq_quality_filter.o ../libfastx/libfastx.a
libtool: link: gcc -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastq_quality_filter fastq_quality_filter.o ../libfastx/libfastx.a
../../config/install-sh -c -d '/Users/suimye/tools/bin'
/bin/sh ../../libtool --mode=install /usr/bin/install -c fastq_quality_filter '/Users/suimye/tools/bin'
libtool: install: /usr/bin/install -c fastq_quality_filter /Users/suimye/tools/bin/fastq_quality_filter
make[3]: Nothing to be done for `install-data-am'.
Making install in fastq_quality_trimmer
gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -MT fastq_quality_trimmer.o -MD -MP -MF .deps/fastq_quality_trimmer.Tpo -c -o fastq_quality_trimmer.o fastq_quality_trimmer.c
mv -f .deps/fastq_quality_trimmer.Tpo .deps/fastq_quality_trimmer.Po
/bin/sh ../../libtool --tag=CC --mode=link gcc -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastq_quality_trimmer fastq_quality_trimmer.o ../libfastx/libfastx.a
libtool: link: gcc -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastq_quality_trimmer fastq_quality_trimmer.o ../libfastx/libfastx.a
../../config/install-sh -c -d '/Users/suimye/tools/bin'
/bin/sh ../../libtool --mode=install /usr/bin/install -c fastq_quality_trimmer '/Users/suimye/tools/bin'
libtool: install: /usr/bin/install -c fastq_quality_trimmer /Users/suimye/tools/bin/fastq_quality_trimmer
make[3]: Nothing to be done for `install-data-am'.
Making install in fastx_artifacts_filter
gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -MT fastx_artifacts_filter.o -MD -MP -MF .deps/fastx_artifacts_filter.Tpo -c -o fastx_artifacts_filter.o fastx_artifacts_filter.c
mv -f .deps/fastx_artifacts_filter.Tpo .deps/fastx_artifacts_filter.Po
/bin/sh ../../libtool --tag=CC --mode=link gcc -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastx_artifacts_filter fastx_artifacts_filter.o ../libfastx/libfastx.a
libtool: link: gcc -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastx_artifacts_filter fastx_artifacts_filter.o ../libfastx/libfastx.a
../../config/install-sh -c -d '/Users/suimye/tools/bin'
/bin/sh ../../libtool --mode=install /usr/bin/install -c fastx_artifacts_filter '/Users/suimye/tools/bin'
libtool: install: /usr/bin/install -c fastx_artifacts_filter /Users/suimye/tools/bin/fastx_artifacts_filter
make[3]: Nothing to be done for `install-data-am'.
Making install in fastx_reverse_complement
gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -MT fastx_reverse_complement.o -MD -MP -MF .deps/fastx_reverse_complement.Tpo -c -o fastx_reverse_complement.o fastx_reverse_complement.c
mv -f .deps/fastx_reverse_complement.Tpo .deps/fastx_reverse_complement.Po
/bin/sh ../../libtool --tag=CC --mode=link gcc -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastx_reverse_complement fastx_reverse_complement.o ../libfastx/libfastx.a
libtool: link: gcc -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastx_reverse_complement fastx_reverse_complement.o ../libfastx/libfastx.a
../../config/install-sh -c -d '/Users/suimye/tools/bin'
/bin/sh ../../libtool --mode=install /usr/bin/install -c fastx_reverse_complement '/Users/suimye/tools/bin'
libtool: install: /usr/bin/install -c fastx_reverse_complement /Users/suimye/tools/bin/fastx_reverse_complement
make[3]: Nothing to be done for `install-data-am'.
Making install in fastx_collapser
g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -g -O2 -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -MT fastx_collapser.o -MD -MP -MF .deps/fastx_collapser.Tpo -c -o fastx_collapser.o fastx_collapser.cpp
mv -f .deps/fastx_collapser.Tpo .deps/fastx_collapser.Po
/bin/sh ../../libtool --tag=CXX --mode=link g++ -g -O2 -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastx_collapser fastx_collapser.o ../libfastx/libfastx.a
libtool: link: g++ -g -O2 -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastx_collapser fastx_collapser.o -Wl,-bind_at_load ../libfastx/libfastx.a
../../config/install-sh -c -d '/Users/suimye/tools/bin'
/bin/sh ../../libtool --mode=install /usr/bin/install -c fastx_collapser '/Users/suimye/tools/bin'
libtool: install: /usr/bin/install -c fastx_collapser /Users/suimye/tools/bin/fastx_collapser
make[3]: Nothing to be done for `install-data-am'.
Making install in fastx_uncollapser
g++ -DHAVE_CONFIG_H -I. -I../.. -I/Users/suimye/tools/lib/include/gtextutils -I../../src/libfastx -g -O2 -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -MT fastx_uncollapser.o -MD -MP -MF .deps/fastx_uncollapser.Tpo -c -o fastx_uncollapser.o fastx_uncollapser.cpp
mv -f .deps/fastx_uncollapser.Tpo .deps/fastx_uncollapser.Po
/bin/sh ../../libtool --tag=CXX --mode=link g++ -g -O2 -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastx_uncollapser fastx_uncollapser.o -L/Users/suimye/tools/lib -lgtextutils ../libfastx/libfastx.a
libtool: link: g++ -g -O2 -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastx_uncollapser fastx_uncollapser.o -Wl,-bind_at_load -L/Users/suimye/tools/lib /usr/local/lib/libgtextutils.dylib ../libfastx/libfastx.a
../../config/install-sh -c -d '/Users/suimye/tools/bin'
/bin/sh ../../libtool --mode=install /usr/bin/install -c fastx_uncollapser '/Users/suimye/tools/bin'
libtool: install: /usr/bin/install -c fastx_uncollapser /Users/suimye/tools/bin/fastx_uncollapser
make[3]: Nothing to be done for `install-data-am'.
Making install in seqalign_test
g++ -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -g -O2 -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -MT seqalign_test.o -MD -MP -MF .deps/seqalign_test.Tpo -c -o seqalign_test.o seqalign_test.cpp
mv -f .deps/seqalign_test.Tpo .deps/seqalign_test.Po
/bin/sh ../../libtool --tag=CXX --mode=link g++ -g -O2 -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o seqalign_test seqalign_test.o ../libfastx/libfastx.a
libtool: link: g++ -g -O2 -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o seqalign_test seqalign_test.o -Wl,-bind_at_load ../libfastx/libfastx.a
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
Making install in fasta_formatter
g++ -DHAVE_CONFIG_H -I. -I../.. -I/Users/suimye/tools/lib/include/gtextutils -I../../src/libfastx -g -O2 -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -MT fasta_formatter.o -MD -MP -MF .deps/fasta_formatter.Tpo -c -o fasta_formatter.o fasta_formatter.cpp
mv -f .deps/fasta_formatter.Tpo .deps/fasta_formatter.Po
/bin/sh ../../libtool --tag=CXX --mode=link g++ -g -O2 -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fasta_formatter fasta_formatter.o -L/Users/suimye/tools/lib -lgtextutils ../libfastx/libfastx.a
libtool: link: g++ -g -O2 -std=c++11 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fasta_formatter fasta_formatter.o -Wl,-bind_at_load -L/Users/suimye/tools/lib /usr/local/lib/libgtextutils.dylib ../libfastx/libfastx.a
../../config/install-sh -c -d '/Users/suimye/tools/bin'
/bin/sh ../../libtool --mode=install /usr/bin/install -c fasta_formatter '/Users/suimye/tools/bin'
libtool: install: /usr/bin/install -c fasta_formatter /Users/suimye/tools/bin/fasta_formatter
make[3]: Nothing to be done for `install-data-am'.
Making install in fasta_nucleotide_changer
gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -MT fasta_nucleotide_changer.o -MD -MP -MF .deps/fasta_nucleotide_changer.Tpo -c -o fasta_nucleotide_changer.o fasta_nucleotide_changer.c
mv -f .deps/fasta_nucleotide_changer.Tpo .deps/fasta_nucleotide_changer.Po
/bin/sh ../../libtool --tag=CC --mode=link gcc -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fasta_nucleotide_changer fasta_nucleotide_changer.o ../libfastx/libfastx.a
libtool: link: gcc -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fasta_nucleotide_changer fasta_nucleotide_changer.o ../libfastx/libfastx.a
../../config/install-sh -c -d '/Users/suimye/tools/bin'
/bin/sh ../../libtool --mode=install /usr/bin/install -c fasta_nucleotide_changer '/Users/suimye/tools/bin'
libtool: install: /usr/bin/install -c fasta_nucleotide_changer /Users/suimye/tools/bin/fasta_nucleotide_changer
make[3]: Nothing to be done for `install-data-am'.
Making install in fastx_renamer
gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -MT fastx_renamer.o -MD -MP -MF .deps/fastx_renamer.Tpo -c -o fastx_renamer.o fastx_renamer.c
mv -f .deps/fastx_renamer.Tpo .deps/fastx_renamer.Po
/bin/sh ../../libtool --tag=CC --mode=link gcc -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastx_renamer fastx_renamer.o ../libfastx/libfastx.a
libtool: link: gcc -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastx_renamer fastx_renamer.o ../libfastx/libfastx.a
../../config/install-sh -c -d '/Users/suimye/tools/bin'
/bin/sh ../../libtool --mode=install /usr/bin/install -c fastx_renamer '/Users/suimye/tools/bin'
libtool: install: /usr/bin/install -c fastx_renamer /Users/suimye/tools/bin/fastx_renamer
make[3]: Nothing to be done for `install-data-am'.
Making install in fastq_masker
gcc -DHAVE_CONFIG_H -I. -I../.. -I../../src/libfastx -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -MT fastq_masker.o -MD -MP -MF .deps/fastq_masker.Tpo -c -o fastq_masker.o fastq_masker.c
mv -f .deps/fastq_masker.Tpo .deps/fastq_masker.Po
/bin/sh ../../libtool --tag=CC --mode=link gcc -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastq_masker fastq_masker.o ../libfastx/libfastx.a
libtool: link: gcc -g -O2 -Wall -Wextra -Wformat-nonliteral -Wformat-security -Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG -g -O1 -o fastq_masker fastq_masker.o ../libfastx/libfastx.a
../../config/install-sh -c -d '/Users/suimye/tools/bin'
/bin/sh ../../libtool --mode=install /usr/bin/install -c fastq_masker '/Users/suimye/tools/bin'
libtool: install: /usr/bin/install -c fastq_masker /Users/suimye/tools/bin/fastq_masker
make[3]: Nothing to be done for `install-data-am'.
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
Making install in doc
make[2]: Nothing to be done for `install-exec-am'.
make[2]: Nothing to be done for `install-data-am'.
Making install in galaxy
Making install in tools
Making install in fastx_toolkit
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
Making install in test-data
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
Making install in static
Making install in fastx_icons
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
make[4]: Nothing to be done for `install-exec-am'.
make[4]: Nothing to be done for `install-data-am'.
Making install in tool-data
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
make[3]: Nothing to be done for `install-exec-am'.
make[3]: Nothing to be done for `install-data-am'.
Making install in scripts
../config/install-sh -c -d '/Users/suimye/tools/bin'
/usr/bin/install -c fastx_barcode_splitter.pl fastx_nucleotide_distribution_graph.sh fastx_nucleotide_distribution_line_graph.sh fastq_quality_boxplot_graph.sh fasta_clipping_histogram.pl '/Users/suimye/tools/bin'
make[2]: Nothing to be done for `install-data-am'.
Making install in build_scripts
make[2]: Nothing to be done for `install-exec-am'.
make[2]: Nothing to be done for `install-data-am'.
make[2]: Nothing to be done for `install-exec-am'.
make[2]: Nothing to be done for `install-data-am'.
