いっつもウガウガするので何とかしようと思い立った。いちどTableとしてもっておかないと無理。
Table
CM000663.2 1 chr1 1 NC_000001.11 248956422
CM000664.2 2 chr2 2 NC_000002.12 242193529
CM000665.2 3 chr3 3 NC_000003.12 198295559
CM000666.2 4 chr4 4 NC_000004.12 190214555
CM000667.2 5 chr5 5 NC_000005.10 181538259
CM000668.2 6 chr6 6 NC_000006.12 170805979
CM000669.2 7 chr7 7 NC_000007.14 159345973
CM000670.2 8 chr8 8 NC_000008.11 145138636
CM000671.2 9 chr9 9 NC_000009.12 138394717
CM000672.2 10 chr10 10 NC_000010.11 133797422
CM000673.2 11 chr11 11 NC_000011.10 135086622
CM000674.2 12 chr12 12 NC_000012.12 133275309
CM000675.2 13 chr13 13 NC_000013.11 114364328
CM000676.2 14 chr14 14 NC_000014.9 107043718
CM000677.2 15 chr15 15 NC_000015.10 101991189
CM000678.2 16 chr16 16 NC_000016.10 90338345
CM000679.2 17 chr17 17 NC_000017.11 83257441
CM000680.2 18 chr18 18 NC_000018.10 80373285
CM000681.2 19 chr19 19 NC_000019.10 58617616
CM000682.2 20 chr20 20 NC_000020.11 64444167
CM000683.2 21 chr21 21 NC_000021.9 46709983
CM000684.2 22 chr22 22 NC_000022.11 50818468
CM000685.2 X chrX X NC_000023.11 156040895
CM000686.2 Y chrY Y NC_000024.10 57227415
GL000008.2 GL000008.2 chr4_GL000008v2_random HSCHR4_RANDOM_CTG4 NT_113793.3 209709
GL000009.2 GL000009.2 chr14_GL000009v2_random HSCHR14_CTG1_UNLOCALIZED NT_113796.3 201709
GL000194.1 GL000194.1 chr14_GL000194v1_random HSCHR14_CTG4_UNLOCALIZED NT_113888.1 191469
GL000195.1 GL000195.1 chrUn_GL000195v1 HSCHRUN_RANDOM_CTG1 NT_113901.1 182896
GL000205.2 GL000205.2 chr17_GL000205v2_random HSCHR17_RANDOM_CTG3 NT_113930.2 185591
GL000208.1 CHR_HSCHR5_RANDOM_CTG1 chr5_GL000208v1_random HSCHR5_RANDOM_CTG1 NT_113948.1 92689
GL000209.2 CHR_HSCHR19KIR_RP5_B_HAP_CTG3_1 chr19_GL000209v2_alt HSCHR19KIR_RP5_B_HAP_CTG3_1 NT_113949.2 177381
GL000213.1 GL000213.1 chrUn_GL000213v1 HSCHRUN_RANDOM_CTG2 NT_167208.1 164239
GL000214.1 CHR_HSCHRUN_RANDOM_CTG4 chrUn_GL000214v1 HSCHRUN_RANDOM_CTG4 NT_167209.1 137718
GL000216.2 GL000216.2 chrUn_GL000216v2 HSCHRUN_RANDOM_CTG6 NT_167211.2 176608
GL000218.1 GL000218.1 chrUn_GL000218v1 HSCHRUN_RANDOM_CTG9 NT_113889.1 161147
GL000219.1 GL000219.1 chrUn_GL000219v1 HSCHRUN_RANDOM_CTG10 NT_167213.1 179198
GL000220.1 GL000220.1 chrUn_GL000220v1 HSCHRUN_RANDOM_CTG11 NT_167214.1 161802
GL000221.1 CHR_HSCHR3UN_CTG2 chr3_GL000221v1_random HSCHR3UN_CTG2 NT_167215.1 155397
GL000224.1 GL000224.1 chrUn_GL000224v1 HSCHRUN_RANDOM_CTG16 NT_167218.1 179693
GL000225.1 GL000225.1 chr14_GL000225v1_random HSCHR14_CTG2_UNLOCALIZED NT_167219.1 211173
GL000226.1 CHR_HSCHRUN_RANDOM_CTG19 chrUn_GL000226v1 HSCHRUN_RANDOM_CTG19 NT_167220.1 15008
GL000250.2 CHR_HSCHR6_MHC_APD_CTG1 chr6_GL000250v2_alt HSCHR6_MHC_APD_CTG1 NT_167244.2 4672374
GL000251.2 CHR_HSCHR6_MHC_COX_CTG1 chr6_GL000251v2_alt HSCHR6_MHC_COX_CTG1 NT_113891.3 4795265
GL000252.2 CHR_HSCHR6_MHC_DBB_CTG1 chr6_GL000252v2_alt HSCHR6_MHC_DBB_CTG1 NT_167245.2 4604811
GL000253.2 CHR_HSCHR6_MHC_MANN_CTG1 chr6_GL000253v2_alt HSCHR6_MHC_MANN_CTG1 NT_167246.2 4677643
GL000254.2 CHR_HSCHR6_MHC_MCF_CTG1 chr6_GL000254v2_alt HSCHR6_MHC_MCF_CTG1 NT_167247.2 4827813
GL000255.2 CHR_HSCHR6_MHC_QBL_CTG1 chr6_GL000255v2_alt HSCHR6_MHC_QBL_CTG1 NT_167248.2 4606388
GL000256.2 CHR_HSCHR6_MHC_SSTO_CTG1 chr6_GL000256v2_alt HSCHR6_MHC_SSTO_CTG1 NT_167249.2 4929269
GL000257.2 CHR_HSCHR4_1_CTG9 chr4_GL000257v2_alt HSCHR4_1_CTG9 NT_167250.2 586476
GL000258.2 CHR_HSCHR17_1_CTG5 chr17_GL000258v2_alt HSCHR17_1_CTG5 NT_167251.2 1821992
GL339449.2 CHR_HSCHR5_2_CTG1_1 chr5_GL339449v2_alt HSCHR5_2_CTG1_1 NW_003315917.2 1612928
GL383518.1 CHR_HSCHR1_1_CTG31 chr1_GL383518v1_alt HSCHR1_1_CTG31 NW_003315905.1 182439
GL383519.1 CHR_HSCHR1_2_CTG31 chr1_GL383519v1_alt HSCHR1_2_CTG31 NW_003315906.1 110268
GL383520.2 CHR_HSCHR1_3_CTG31 chr1_GL383520v2_alt HSCHR1_3_CTG31 NW_003315907.2 366580
GL383521.1 CHR_HSCHR2_1_CTG5 chr2_GL383521v1_alt HSCHR2_1_CTG5 NW_003315908.1 143390
GL383522.1 CHR_HSCHR2_1_CTG7_2 chr2_GL383522v1_alt HSCHR2_1_CTG7_2 NW_003315909.1 123821
GL383526.1 CHR_HSCHR3_1_CTG2_1 chr3_GL383526v1_alt HSCHR3_1_CTG2_1 NW_003315913.1 180671
GL383527.1 CHR_HSCHR4_1_CTG12 chr4_GL383527v1_alt HSCHR4_1_CTG12 NW_003315914.1 164536
GL383528.1 CHR_HSCHR4_1_CTG6 chr4_GL383528v1_alt HSCHR4_1_CTG6 NW_003315915.1 376187
GL383530.1 CHR_HSCHR5_3_CTG1_1 chr5_GL383530v1_alt HSCHR5_3_CTG1_1 NW_003315918.1 101241
GL383531.1 CHR_HSCHR5_1_CTG5 chr5_GL383531v1_alt HSCHR5_1_CTG5 NW_003315919.1 173459
GL383532.1 CHR_HSCHR5_1_CTG1 chr5_GL383532v1_alt HSCHR5_1_CTG1 NW_003315920.1 82728
GL383533.1 CHR_HSCHR6_1_CTG2 chr6_GL383533v1_alt HSCHR6_1_CTG2 NW_003315921.1 124736
GL383534.2 CHR_HSCHR7_1_CTG6 chr7_GL383534v2_alt HSCHR7_1_CTG6 NW_003315922.2 119183
GL383539.1 CHR_HSCHR9_1_CTG1 chr9_GL383539v1_alt HSCHR9_1_CTG1 NW_003315928.1 162988
GL383540.1 CHR_HSCHR9_1_CTG2 chr9_GL383540v1_alt HSCHR9_1_CTG2 NW_003315929.1 71551
GL383541.1 CHR_HSCHR9_1_CTG3 chr9_GL383541v1_alt HSCHR9_1_CTG3 NW_003315930.1 171286
GL383542.1 CHR_HSCHR9_1_CTG4 chr9_GL383542v1_alt HSCHR9_1_CTG4 NW_003315931.1 60032
GL383545.1 CHR_HSCHR10_1_CTG1 chr10_GL383545v1_alt HSCHR10_1_CTG1 NW_003315934.1 179254
GL383546.1 CHR_HSCHR10_1_CTG2 chr10_GL383546v1_alt HSCHR10_1_CTG2 NW_003315935.1 309802
GL383547.1 CHR_HSCHR11_1_CTG1_1 chr11_GL383547v1_alt HSCHR11_1_CTG1_1 NW_003315936.1 154407
GL383549.1 CHR_HSCHR12_1_CTG2 chr12_GL383549v1_alt HSCHR12_1_CTG2 NW_003315938.1 120804
GL383550.2 CHR_HSCHR12_1_CTG2_1 chr12_GL383550v2_alt HSCHR12_1_CTG2_1 NW_003315939.2 169178
GL383551.1 CHR_HSCHR12_4_CTG2_1 chr12_GL383551v1_alt HSCHR12_4_CTG2_1 NW_003315940.1 184319
GL383552.1 CHR_HSCHR12_2_CTG2_1 chr12_GL383552v1_alt HSCHR12_2_CTG2_1 NW_003315941.1 138655
GL383553.2 CHR_HSCHR12_3_CTG2_1 chr12_GL383553v2_alt HSCHR12_3_CTG2_1 NW_003315942.2 152874
GL383554.1 CHR_HSCHR15_1_CTG8 chr15_GL383554v1_alt HSCHR15_1_CTG8 NW_003315943.1 296527
GL383555.2 CHR_HSCHR15_2_CTG8 chr15_GL383555v2_alt HSCHR15_2_CTG8 NW_003315944.2 388773
GL383556.1 CHR_HSCHR16_1_CTG3_1 chr16_GL383556v1_alt HSCHR16_1_CTG3_1 NW_003315945.1 192462
GL383557.1 CHR_HSCHR16_2_CTG3_1 chr16_GL383557v1_alt HSCHR16_2_CTG3_1 NW_003315946.1 89672
GL383563.3 CHR_HSCHR17_1_CTG1 chr17_GL383563v3_alt HSCHR17_1_CTG1 NW_003315952.3 375691
GL383564.2 CHR_HSCHR17_1_CTG4 chr17_GL383564v2_alt HSCHR17_1_CTG4 NW_003315953.2 133151
GL383565.1 CHR_HSCHR17_2_CTG4 chr17_GL383565v1_alt HSCHR17_2_CTG4 NW_003315954.1 223995
GL383566.1 CHR_HSCHR17_3_CTG4 chr17_GL383566v1_alt HSCHR17_3_CTG4 NW_003315955.1 90219
GL383567.1 CHR_HSCHR18_1_CTG1_1 chr18_GL383567v1_alt HSCHR18_1_CTG1_1 NW_003315956.1 289831
GL383568.1 CHR_HSCHR18_1_CTG2 chr18_GL383568v1_alt HSCHR18_1_CTG2 NW_003315957.1 104552
GL383569.1 CHR_HSCHR18_1_CTG2_1 chr18_GL383569v1_alt HSCHR18_1_CTG2_1 NW_003315958.1 167950
GL383570.1 CHR_HSCHR18_2_CTG1_1 chr18_GL383570v1_alt HSCHR18_2_CTG1_1 NW_003315959.1 164789
GL383571.1 CHR_HSCHR18_2_CTG2 chr18_GL383571v1_alt HSCHR18_2_CTG2 NW_003315960.1 198278
GL383572.1 CHR_HSCHR18_2_CTG2_1 chr18_GL383572v1_alt HSCHR18_2_CTG2_1 NW_003315961.1 159547
GL383573.1 CHR_HSCHR19_1_CTG2 chr19_GL383573v1_alt HSCHR19_1_CTG2 NW_003315962.1 385657
GL383574.1 CHR_HSCHR19_1_CTG3_1 chr19_GL383574v1_alt HSCHR19_1_CTG3_1 NW_003315963.1 155864
GL383575.2 CHR_HSCHR19_2_CTG2 chr19_GL383575v2_alt HSCHR19_2_CTG2 NW_003315964.2 170222
GL383576.1 CHR_HSCHR19_3_CTG2 chr19_GL383576v1_alt HSCHR19_3_CTG2 NW_003315965.1 188024
GL383577.2 CHR_HSCHR20_1_CTG1 chr20_GL383577v2_alt HSCHR20_1_CTG1 NW_003315966.2 128386
GL383578.2 CHR_HSCHR21_1_CTG1_1 chr21_GL383578v2_alt HSCHR21_1_CTG1_1 NW_003315967.2 63917
GL383579.2 CHR_HSCHR21_2_CTG1_1 chr21_GL383579v2_alt HSCHR21_2_CTG1_1 NW_003315968.2 201197
GL383580.2 CHR_HSCHR21_3_CTG1_1 chr21_GL383580v2_alt HSCHR21_3_CTG1_1 NW_003315969.2 74653
GL383581.2 CHR_HSCHR21_4_CTG1_1 chr21_GL383581v2_alt HSCHR21_4_CTG1_1 NW_003315970.2 116689
GL383582.2 CHR_HSCHR22_1_CTG1 chr22_GL383582v2_alt HSCHR22_1_CTG1 NW_003315971.2 162811
GL383583.2 CHR_HSCHR22_1_CTG2 chr22_GL383583v2_alt HSCHR22_1_CTG2 NW_003315972.2 96924
GL582966.2 CHR_HSCHR2_2_CTG7_2 chr2_GL582966v2_alt HSCHR2_2_CTG7_2 NW_003571033.2 96131
GL877875.1 CHR_HSCHR12_1_CTG1 chr12_GL877875v1_alt HSCHR12_1_CTG1 NW_003571049.1 167313
GL877876.1 CHR_HSCHR12_2_CTG2 chr12_GL877876v1_alt HSCHR12_2_CTG2 NW_003571050.1 408271
GL949742.1 CHR_HSCHR5_2_CTG1 chr5_GL949742v1_alt HSCHR5_2_CTG1 NW_003571036.1 226852
GL949746.1 CHR_HSCHR19LRC_COX1_CTG3_1 chr19_GL949746v1_alt HSCHR19LRC_COX1_CTG3_1 NW_003571054.1 987716
GL949747.2 CHR_HSCHR19LRC_COX2_CTG3_1 chr19_GL949747v2_alt HSCHR19LRC_COX2_CTG3_1 NW_003571055.2 729520
GL949748.2 CHR_HSCHR19LRC_LRC_I_CTG3_1 chr19_GL949748v2_alt HSCHR19LRC_LRC_I_CTG3_1 NW_003571056.2 1064304
GL949749.2 CHR_HSCHR19LRC_LRC_J_CTG3_1 chr19_GL949749v2_alt HSCHR19LRC_LRC_J_CTG3_1 NW_003571057.2 1091841
GL949750.2 CHR_HSCHR19LRC_LRC_S_CTG3_1 chr19_GL949750v2_alt HSCHR19LRC_LRC_S_CTG3_1 NW_003571058.2 1066390
GL949751.2 CHR_HSCHR19LRC_LRC_T_CTG3_1 chr19_GL949751v2_alt HSCHR19LRC_LRC_T_CTG3_1 NW_003571059.2 1002683
GL949752.1 CHR_HSCHR19LRC_PGF1_CTG3_1 chr19_GL949752v1_alt HSCHR19LRC_PGF1_CTG3_1 NW_003571060.1 987100
GL949753.2 CHR_HSCHR19LRC_PGF2_CTG3_1 chr19_GL949753v2_alt HSCHR19LRC_PGF2_CTG3_1 NW_003571061.2 796479
J01415.2 MT chrM MT NC_012920.1 16569
JH159136.1 HG142_HG150_NOVEL_TEST chr11_JH159136v1_alt HG142_HG150_NOVEL_TEST NW_003871073.1 200998
JH159137.1 HG151_NOVEL_TEST chr11_JH159137v1_alt HG151_NOVEL_TEST NW_003871074.1 191409
JH159146.1 CHR_HSCHR17_4_CTG4 chr17_JH159146v1_alt HSCHR17_4_CTG4 NW_003871091.1 278131
JH159147.1 CHR_HSCHR17_5_CTG4 chr17_JH159147v1_alt HSCHR17_5_CTG4 NW_003871092.1 70345
JH159148.1 CHR_HSCHR17_6_CTG4 chr17_JH159148v1_alt HSCHR17_6_CTG4 NW_003871093.1 88070
JH636055.2 CHR_HSCHR3_1_CTG1 chr3_JH636055v2_alt HSCHR3_1_CTG1 NW_003871060.2 173151
KB021644.2 CHR_HSCHR6_1_CTG3 chr6_KB021644v2_alt HSCHR6_1_CTG3 NW_004166862.2 185823
KB663609.1 CHR_HSCHR22_2_CTG1 chr22_KB663609v1_alt HSCHR22_2_CTG1 NW_004504305.1 74013
KI270302.1 CHR_HSCHRUN_RANDOM_100 chrUn_KI270302v1 HSCHRUN_RANDOM_100 NT_187396.1 2274
KI270303.1 CHR_HSCHRUN_RANDOM_102 chrUn_KI270303v1 HSCHRUN_RANDOM_102 NT_187398.1 1942
KI270304.1 CHR_HSCHRUN_RANDOM_101 chrUn_KI270304v1 HSCHRUN_RANDOM_101 NT_187397.1 2165
KI270305.1 CHR_HSCHRUN_RANDOM_103 chrUn_KI270305v1 HSCHRUN_RANDOM_103 NT_187399.1 1472
KI270310.1 CHR_HSCHRUN_RANDOM_106 chrUn_KI270310v1 HSCHRUN_RANDOM_106 NT_187402.1 1201
KI270311.1 CHR_HSCHRUN_RANDOM_110 chrUn_KI270311v1 HSCHRUN_RANDOM_110 NT_187406.1 12399
KI270312.1 CHR_HSCHRUN_RANDOM_109 chrUn_KI270312v1 HSCHRUN_RANDOM_109 NT_187405.1 998
KI270315.1 CHR_HSCHRUN_RANDOM_108 chrUn_KI270315v1 HSCHRUN_RANDOM_108 NT_187404.1 2276
KI270316.1 CHR_HSCHRUN_RANDOM_107 chrUn_KI270316v1 HSCHRUN_RANDOM_107 NT_187403.1 1444
KI270317.1 CHR_HSCHRUN_RANDOM_111 chrUn_KI270317v1 HSCHRUN_RANDOM_111 NT_187407.1 37690
KI270320.1 CHR_HSCHRUN_RANDOM_105 chrUn_KI270320v1 HSCHRUN_RANDOM_105 NT_187401.1 4416
KI270322.1 CHR_HSCHRUN_RANDOM_104 chrUn_KI270322v1 HSCHRUN_RANDOM_104 NT_187400.1 21476
KI270329.1 CHR_HSCHRUN_RANDOM_167 chrUn_KI270329v1 HSCHRUN_RANDOM_167 NT_187459.1 1040
KI270330.1 CHR_HSCHRUN_RANDOM_166 chrUn_KI270330v1 HSCHRUN_RANDOM_166 NT_187458.1 1652
KI270333.1 CHR_HSCHRUN_RANDOM_169 chrUn_KI270333v1 HSCHRUN_RANDOM_169 NT_187461.1 2699
KI270334.1 CHR_HSCHRUN_RANDOM_168 chrUn_KI270334v1 HSCHRUN_RANDOM_168 NT_187460.1 1368
KI270335.1 CHR_HSCHRUN_RANDOM_170 chrUn_KI270335v1 HSCHRUN_RANDOM_170 NT_187462.1 1048
KI270336.1 CHR_HSCHRUN_RANDOM_173 chrUn_KI270336v1 HSCHRUN_RANDOM_173 NT_187465.1 1026
KI270337.1 CHR_HSCHRUN_RANDOM_174 chrUn_KI270337v1 HSCHRUN_RANDOM_174 NT_187466.1 1121
KI270338.1 CHR_HSCHRUN_RANDOM_171 chrUn_KI270338v1 HSCHRUN_RANDOM_171 NT_187463.1 1428
KI270340.1 CHR_HSCHRUN_RANDOM_172 chrUn_KI270340v1 HSCHRUN_RANDOM_172 NT_187464.1 1428
KI270362.1 CHR_HSCHRUN_RANDOM_177 chrUn_KI270362v1 HSCHRUN_RANDOM_177 NT_187469.1 3530
KI270363.1 CHR_HSCHRUN_RANDOM_175 chrUn_KI270363v1 HSCHRUN_RANDOM_175 NT_187467.1 1803
KI270364.1 CHR_HSCHRUN_RANDOM_176 chrUn_KI270364v1 HSCHRUN_RANDOM_176 NT_187468.1 2855
KI270366.1 CHR_HSCHRUN_RANDOM_178 chrUn_KI270366v1 HSCHRUN_RANDOM_178 NT_187470.1 8320
KI270371.1 CHR_HSCHRUN_RANDOM_202 chrUn_KI270371v1 HSCHRUN_RANDOM_202 NT_187494.1 2805
KI270372.1 CHR_HSCHRUN_RANDOM_199 chrUn_KI270372v1 HSCHRUN_RANDOM_199 NT_187491.1 1650
KI270373.1 CHR_HSCHRUN_RANDOM_200 chrUn_KI270373v1 HSCHRUN_RANDOM_200 NT_187492.1 1451
KI270374.1 CHR_HSCHRUN_RANDOM_198 chrUn_KI270374v1 HSCHRUN_RANDOM_198 NT_187490.1 2656
KI270375.1 CHR_HSCHRUN_RANDOM_201 chrUn_KI270375v1 HSCHRUN_RANDOM_201 NT_187493.1 2378
KI270376.1 CHR_HSCHRUN_RANDOM_197 chrUn_KI270376v1 HSCHRUN_RANDOM_197 NT_187489.1 1136
KI270378.1 CHR_HSCHRUN_RANDOM_179 chrUn_KI270378v1 HSCHRUN_RANDOM_179 NT_187471.1 1048
KI270379.1 CHR_HSCHRUN_RANDOM_180 chrUn_KI270379v1 HSCHRUN_RANDOM_180 NT_187472.1 1045
KI270381.1 CHR_HSCHRUN_RANDOM_194 chrUn_KI270381v1 HSCHRUN_RANDOM_194 NT_187486.1 1930
KI270382.1 CHR_HSCHRUN_RANDOM_196 chrUn_KI270382v1 HSCHRUN_RANDOM_196 NT_187488.1 4215
KI270383.1 CHR_HSCHRUN_RANDOM_190 chrUn_KI270383v1 HSCHRUN_RANDOM_190 NT_187482.1 1750
KI270384.1 CHR_HSCHRUN_RANDOM_192 chrUn_KI270384v1 HSCHRUN_RANDOM_192 NT_187484.1 1658
KI270385.1 CHR_HSCHRUN_RANDOM_195 chrUn_KI270385v1 HSCHRUN_RANDOM_195 NT_187487.1 990
KI270386.1 CHR_HSCHRUN_RANDOM_188 chrUn_KI270386v1 HSCHRUN_RANDOM_188 NT_187480.1 1788
KI270387.1 CHR_HSCHRUN_RANDOM_183 chrUn_KI270387v1 HSCHRUN_RANDOM_183 NT_187475.1 1537
KI270388.1 CHR_HSCHRUN_RANDOM_186 chrUn_KI270388v1 HSCHRUN_RANDOM_186 NT_187478.1 1216
KI270389.1 CHR_HSCHRUN_RANDOM_181 chrUn_KI270389v1 HSCHRUN_RANDOM_181 NT_187473.1 1298
KI270390.1 CHR_HSCHRUN_RANDOM_182 chrUn_KI270390v1 HSCHRUN_RANDOM_182 NT_187474.1 2387
KI270391.1 CHR_HSCHRUN_RANDOM_189 chrUn_KI270391v1 HSCHRUN_RANDOM_189 NT_187481.1 1484
KI270392.1 CHR_HSCHRUN_RANDOM_193 chrUn_KI270392v1 HSCHRUN_RANDOM_193 NT_187485.1 971
KI270393.1 CHR_HSCHRUN_RANDOM_191 chrUn_KI270393v1 HSCHRUN_RANDOM_191 NT_187483.1 1308
KI270394.1 CHR_HSCHRUN_RANDOM_187 chrUn_KI270394v1 HSCHRUN_RANDOM_187 NT_187479.1 970
KI270395.1 CHR_HSCHRUN_RANDOM_184 chrUn_KI270395v1 HSCHRUN_RANDOM_184 NT_187476.1 1143
KI270396.1 CHR_HSCHRUN_RANDOM_185 chrUn_KI270396v1 HSCHRUN_RANDOM_185 NT_187477.1 1880
KI270411.1 CHR_HSCHRUN_RANDOM_113 chrUn_KI270411v1 HSCHRUN_RANDOM_113 NT_187409.1 2646
KI270412.1 CHR_HSCHRUN_RANDOM_112 chrUn_KI270412v1 HSCHRUN_RANDOM_112 NT_187408.1 1179
KI270414.1 CHR_HSCHRUN_RANDOM_114 chrUn_KI270414v1 HSCHRUN_RANDOM_114 NT_187410.1 2489
KI270417.1 CHR_HSCHRUN_RANDOM_119 chrUn_KI270417v1 HSCHRUN_RANDOM_119 NT_187415.1 2043
KI270418.1 CHR_HSCHRUN_RANDOM_116 chrUn_KI270418v1 HSCHRUN_RANDOM_116 NT_187412.1 2145
KI270419.1 CHR_HSCHRUN_RANDOM_115 chrUn_KI270419v1 HSCHRUN_RANDOM_115 NT_187411.1 1029
KI270420.1 CHR_HSCHRUN_RANDOM_117 chrUn_KI270420v1 HSCHRUN_RANDOM_117 NT_187413.1 2321
KI270422.1 CHR_HSCHRUN_RANDOM_120 chrUn_KI270422v1 HSCHRUN_RANDOM_120 NT_187416.1 1445
KI270423.1 CHR_HSCHRUN_RANDOM_121 chrUn_KI270423v1 HSCHRUN_RANDOM_121 NT_187417.1 981
KI270424.1 CHR_HSCHRUN_RANDOM_118 chrUn_KI270424v1 HSCHRUN_RANDOM_118 NT_187414.1 2140
KI270425.1 CHR_HSCHRUN_RANDOM_122 chrUn_KI270425v1 HSCHRUN_RANDOM_122 NT_187418.1 1884
KI270429.1 CHR_HSCHRUN_RANDOM_123 chrUn_KI270429v1 HSCHRUN_RANDOM_123 NT_187419.1 1361
KI270435.1 CHR_HSCHRUN_RANDOM_128 chrUn_KI270435v1 HSCHRUN_RANDOM_128 NT_187424.1 92983
KI270438.1 CHR_HSCHRUN_RANDOM_129 chrUn_KI270438v1 HSCHRUN_RANDOM_129 NT_187425.1 112505
KI270442.1 KI270442.1 chrUn_KI270442v1 HSCHRUN_RANDOM_124 NT_187420.1 392061
KI270448.1 CHR_HSCHRUN_RANDOM_203 chrUn_KI270448v1 HSCHRUN_RANDOM_203 NT_187495.1 7992
KI270465.1 CHR_HSCHRUN_RANDOM_126 chrUn_KI270465v1 HSCHRUN_RANDOM_126 NT_187422.1 1774
KI270466.1 CHR_HSCHRUN_RANDOM_125 chrUn_KI270466v1 HSCHRUN_RANDOM_125 NT_187421.1 1233
KI270467.1 CHR_HSCHRUN_RANDOM_127 chrUn_KI270467v1 HSCHRUN_RANDOM_127 NT_187423.1 3920
KI270468.1 CHR_HSCHRUN_RANDOM_130 chrUn_KI270468v1 HSCHRUN_RANDOM_130 NT_187426.1 4055
KI270507.1 CHR_HSCHRUN_RANDOM_141 chrUn_KI270507v1 HSCHRUN_RANDOM_141 NT_187437.1 5353
KI270508.1 CHR_HSCHRUN_RANDOM_134 chrUn_KI270508v1 HSCHRUN_RANDOM_134 NT_187430.1 1951
KI270509.1 CHR_HSCHRUN_RANDOM_132 chrUn_KI270509v1 HSCHRUN_RANDOM_132 NT_187428.1 2318
KI270510.1 CHR_HSCHRUN_RANDOM_131 chrUn_KI270510v1 HSCHRUN_RANDOM_131 NT_187427.1 2415
KI270511.1 CHR_HSCHRUN_RANDOM_139 chrUn_KI270511v1 HSCHRUN_RANDOM_139 NT_187435.1 8127
KI270512.1 CHR_HSCHRUN_RANDOM_136 chrUn_KI270512v1 HSCHRUN_RANDOM_136 NT_187432.1 22689
KI270515.1 CHR_HSCHRUN_RANDOM_140 chrUn_KI270515v1 HSCHRUN_RANDOM_140 NT_187436.1 6361
KI270516.1 CHR_HSCHRUN_RANDOM_135 chrUn_KI270516v1 HSCHRUN_RANDOM_135 NT_187431.1 1300
KI270517.1 CHR_HSCHRUN_RANDOM_142 chrUn_KI270517v1 HSCHRUN_RANDOM_142 NT_187438.1 3253
KI270518.1 CHR_HSCHRUN_RANDOM_133 chrUn_KI270518v1 HSCHRUN_RANDOM_133 NT_187429.1 2186
KI270519.1 CHR_HSCHRUN_RANDOM_137 chrUn_KI270519v1 HSCHRUN_RANDOM_137 NT_187433.1 138126
KI270521.1 CHR_HSCHRUN_RANDOM_204 chrUn_KI270521v1 HSCHRUN_RANDOM_204 NT_187496.1 7642
KI270522.1 CHR_HSCHRUN_RANDOM_138 chrUn_KI270522v1 HSCHRUN_RANDOM_138 NT_187434.1 5674
KI270528.1 CHR_HSCHRUN_RANDOM_144 chrUn_KI270528v1 HSCHRUN_RANDOM_144 NT_187440.1 2983
KI270529.1 CHR_HSCHRUN_RANDOM_143 chrUn_KI270529v1 HSCHRUN_RANDOM_143 NT_187439.1 1899
KI270530.1 CHR_HSCHRUN_RANDOM_145 chrUn_KI270530v1 HSCHRUN_RANDOM_145 NT_187441.1 2168
KI270538.1 CHR_HSCHRUN_RANDOM_147 chrUn_KI270538v1 HSCHRUN_RANDOM_147 NT_187443.1 91309
KI270539.1 CHR_HSCHRUN_RANDOM_146 chrUn_KI270539v1 HSCHRUN_RANDOM_146 NT_187442.1 993
KI270544.1 CHR_HSCHRUN_RANDOM_148 chrUn_KI270544v1 HSCHRUN_RANDOM_148 NT_187444.1 1202
KI270548.1 CHR_HSCHRUN_RANDOM_149 chrUn_KI270548v1 HSCHRUN_RANDOM_149 NT_187445.1 1599
KI270579.1 CHR_HSCHRUN_RANDOM_158 chrUn_KI270579v1 HSCHRUN_RANDOM_158 NT_187450.1 31033
KI270580.1 CHR_HSCHRUN_RANDOM_156 chrUn_KI270580v1 HSCHRUN_RANDOM_156 NT_187448.1 1553
KI270581.1 CHR_HSCHRUN_RANDOM_157 chrUn_KI270581v1 HSCHRUN_RANDOM_157 NT_187449.1 7046
KI270582.1 CHR_HSCHRUN_RANDOM_162 chrUn_KI270582v1 HSCHRUN_RANDOM_162 NT_187454.1 6504
KI270583.1 CHR_HSCHRUN_RANDOM_154 chrUn_KI270583v1 HSCHRUN_RANDOM_154 NT_187446.1 1400
KI270584.1 CHR_HSCHRUN_RANDOM_161 chrUn_KI270584v1 HSCHRUN_RANDOM_161 NT_187453.1 4513
KI270587.1 CHR_HSCHRUN_RANDOM_155 chrUn_KI270587v1 HSCHRUN_RANDOM_155 NT_187447.1 2969
KI270588.1 CHR_HSCHRUN_RANDOM_163 chrUn_KI270588v1 HSCHRUN_RANDOM_163 NT_187455.1 6158
KI270589.1 CHR_HSCHRUN_RANDOM_159 chrUn_KI270589v1 HSCHRUN_RANDOM_159 NT_187451.1 44474
KI270590.1 CHR_HSCHRUN_RANDOM_160 chrUn_KI270590v1 HSCHRUN_RANDOM_160 NT_187452.1 4685
KI270591.1 CHR_HSCHRUN_RANDOM_165 chrUn_KI270591v1 HSCHRUN_RANDOM_165 NT_187457.1 5796
KI270593.1 CHR_HSCHRUN_RANDOM_164 chrUn_KI270593v1 HSCHRUN_RANDOM_164 NT_187456.1 3041
KI270706.1 KI270706.1 chr1_KI270706v1_random HSCHR1_CTG1_UNLOCALIZED NT_187361.1 175055
KI270707.1 KI270707.1 chr1_KI270707v1_random HSCHR1_CTG2_UNLOCALIZED NT_187362.1 32032
KI270708.1 KI270708.1 chr1_KI270708v1_random HSCHR1_CTG3_UNLOCALIZED NT_187363.1 127682
KI270709.1 CHR_HSCHR1_CTG4_UNLOCALIZED chr1_KI270709v1_random HSCHR1_CTG4_UNLOCALIZED NT_187364.1 66860
KI270710.1 CHR_HSCHR1_CTG5_UNLOCALIZED chr1_KI270710v1_random HSCHR1_CTG5_UNLOCALIZED NT_187365.1 40176
KI270711.1 KI270711.1 chr1_KI270711v1_random HSCHR1_CTG6_UNLOCALIZED NT_187366.1 42210
KI270712.1 CHR_HSCHR1_CTG7_UNLOCALIZED chr1_KI270712v1_random HSCHR1_CTG7_UNLOCALIZED NT_187367.1 176043
KI270713.1 KI270713.1 chr1_KI270713v1_random HSCHR1_CTG8_UNLOCALIZED NT_187368.1 40745
KI270714.1 KI270714.1 chr1_KI270714v1_random HSCHR1_CTG9_UNLOCALIZED NT_187369.1 41717
KI270715.1 CHR_HSCHR2_RANDOM_CTG1 chr2_KI270715v1_random HSCHR2_RANDOM_CTG1 NT_187370.1 161471
KI270716.1 CHR_HSCHR2_RANDOM_CTG2 chr2_KI270716v1_random HSCHR2_RANDOM_CTG2 NT_187371.1 153799
KI270717.1 CHR_HSCHR9_UNLOCALIZED_CTG1 chr9_KI270717v1_random HSCHR9_UNLOCALIZED_CTG1 NT_187372.1 40062
KI270718.1 CHR_HSCHR9_UNLOCALIZED_CTG2 chr9_KI270718v1_random HSCHR9_UNLOCALIZED_CTG2 NT_187373.1 38054
KI270719.1 CHR_HSCHR9_UNLOCALIZED_CTG3 chr9_KI270719v1_random HSCHR9_UNLOCALIZED_CTG3 NT_187374.1 176845
KI270720.1 CHR_HSCHR9_UNLOCALIZED_CTG4 chr9_KI270720v1_random HSCHR9_UNLOCALIZED_CTG4 NT_187375.1 39050
KI270721.1 KI270721.1 chr11_KI270721v1_random HSCHR11_CTG1_UNLOCALIZED NT_187376.1 100316
KI270722.1 KI270722.1 chr14_KI270722v1_random HSCHR14_CTG3_UNLOCALIZED NT_187377.1 194050
KI270723.1 KI270723.1 chr14_KI270723v1_random HSCHR14_CTG5_UNLOCALIZED NT_187378.1 38115
KI270724.1 KI270724.1 chr14_KI270724v1_random HSCHR14_CTG6_UNLOCALIZED NT_187379.1 39555
KI270725.1 CHR_HSCHR14_CTG7_UNLOCALIZED chr14_KI270725v1_random HSCHR14_CTG7_UNLOCALIZED NT_187380.1 172810
KI270726.1 KI270726.1 chr14_KI270726v1_random HSCHR14_CTG8_UNLOCALIZED NT_187381.1 43739
KI270727.1 KI270727.1 chr15_KI270727v1_random HSCHR15_RANDOM_CTG1 NT_187382.1 448248
KI270728.1 KI270728.1 chr16_KI270728v1_random HSCHR16_RANDOM_CTG1 NT_187383.1 1872759
KI270729.1 CHR_HSCHR17_RANDOM_CTG4 chr17_KI270729v1_random HSCHR17_RANDOM_CTG4 NT_187384.1 280839
KI270730.1 CHR_HSCHR17_RANDOM_CTG5 chr17_KI270730v1_random HSCHR17_RANDOM_CTG5 NT_187385.1 112551
KI270731.1 KI270731.1 chr22_KI270731v1_random HSCHR22_UNLOCALIZED_CTG1 NT_187386.1 150754
KI270732.1 CHR_HSCHR22_UNLOCALIZED_CTG2 chr22_KI270732v1_random HSCHR22_UNLOCALIZED_CTG2 NT_187387.1 41543
KI270733.1 KI270733.1 chr22_KI270733v1_random HSCHR22_UNLOCALIZED_CTG3 NT_187388.1 179772
KI270734.1 KI270734.1 chr22_KI270734v1_random HSCHR22_UNLOCALIZED_CTG4 NT_187389.1 165050
KI270735.1 CHR_HSCHR22_UNLOCALIZED_CTG5 chr22_KI270735v1_random HSCHR22_UNLOCALIZED_CTG5 NT_187390.1 42811
KI270736.1 CHR_HSCHR22_UNLOCALIZED_CTG6 chr22_KI270736v1_random HSCHR22_UNLOCALIZED_CTG6 NT_187391.1 181920
KI270737.1 CHR_HSCHR22_UNLOCALIZED_CTG7 chr22_KI270737v1_random HSCHR22_UNLOCALIZED_CTG7 NT_187392.1 103838
KI270738.1 CHR_HSCHR22_UNLOCALIZED_CTG8 chr22_KI270738v1_random HSCHR22_UNLOCALIZED_CTG8 NT_187393.1 99375
KI270739.1 CHR_HSCHR22_UNLOCALIZED_CTG9 chr22_KI270739v1_random HSCHR22_UNLOCALIZED_CTG9 NT_187394.1 73985
KI270740.1 CHR_HSCHRY_RANDOM_CTG1 chrY_KI270740v1_random HSCHRY_RANDOM_CTG1 NT_187395.1 37240
KI270741.1 KI270741.1 chrUn_KI270741v1 HSCHRUN_RANDOM_CTG17 NT_187497.1 157432
KI270742.1 CHR_HSCHRUN_RANDOM_CTG42 chrUn_KI270742v1 HSCHRUN_RANDOM_CTG42 NT_187513.1 186739
KI270743.1 KI270743.1 chrUn_KI270743v1 HSCHRUN_RANDOM_CTG20 NT_187498.1 210658
KI270744.1 KI270744.1 chrUn_KI270744v1 HSCHRUN_RANDOM_CTG21 NT_187499.1 168472
KI270745.1 CHR_HSCHRUN_RANDOM_CTG22 chrUn_KI270745v1 HSCHRUN_RANDOM_CTG22 NT_187500.1 41891
KI270746.1 CHR_HSCHRUN_RANDOM_CTG23 chrUn_KI270746v1 HSCHRUN_RANDOM_CTG23 NT_187501.1 66486
KI270747.1 CHR_HSCHRUN_RANDOM_CTG24 chrUn_KI270747v1 HSCHRUN_RANDOM_CTG24 NT_187502.1 198735
KI270748.1 CHR_HSCHRUN_RANDOM_CTG25 chrUn_KI270748v1 HSCHRUN_RANDOM_CTG25 NT_187503.1 93321
KI270749.1 CHR_HSCHRUN_RANDOM_CTG26 chrUn_KI270749v1 HSCHRUN_RANDOM_CTG26 NT_187504.1 158759
KI270750.1 KI270750.1 chrUn_KI270750v1 HSCHRUN_RANDOM_CTG27 NT_187505.1 148850
KI270751.1 CHR_HSCHRUN_RANDOM_CTG28 chrUn_KI270751v1 HSCHRUN_RANDOM_CTG28 NT_187506.1 150742
KI270752.1 KI270752.1 chrUn_KI270752v1 HSCHRUN_RANDOM_CTG29 NT_187507.1 27745
KI270753.1 CHR_HSCHRUN_RANDOM_CTG30 chrUn_KI270753v1 HSCHRUN_RANDOM_CTG30 NT_187508.1 62944
KI270754.1 CHR_HSCHRUN_RANDOM_CTG33 chrUn_KI270754v1 HSCHRUN_RANDOM_CTG33 NT_187509.1 40191
KI270755.1 CHR_HSCHRUN_RANDOM_CTG34 chrUn_KI270755v1 HSCHRUN_RANDOM_CTG34 NT_187510.1 36723
KI270756.1 CHR_HSCHRUN_RANDOM_CTG35 chrUn_KI270756v1 HSCHRUN_RANDOM_CTG35 NT_187511.1 79590
KI270757.1 CHR_HSCHRUN_RANDOM_CTG36 chrUn_KI270757v1 HSCHRUN_RANDOM_CTG36 NT_187512.1 71251
KI270758.1 CHR_HSCHR6_8_CTG1 chr6_KI270758v1_alt HSCHR6_8_CTG1 NT_187692.1 76752
KI270759.1 CHR_HSCHR1_1_CTG32_1 chr1_KI270759v1_alt HSCHR1_1_CTG32_1 NT_187516.1 425601
KI270760.1 CHR_HSCHR1_1_CTG11 chr1_KI270760v1_alt HSCHR1_1_CTG11 NT_187514.1 109528
KI270761.1 CHR_HSCHR1_2_CTG32_1 chr1_KI270761v1_alt HSCHR1_2_CTG32_1 NT_187518.1 165834
KI270762.1 CHR_HSCHR1_1_CTG3 chr1_KI270762v1_alt HSCHR1_1_CTG3 NT_187515.1 354444
KI270763.1 CHR_HSCHR1_3_CTG32_1 chr1_KI270763v1_alt HSCHR1_3_CTG32_1 NT_187519.1 911658
KI270764.1 CHR_HSCHR1_4_CTG32_1 chr1_KI270764v1_alt HSCHR1_4_CTG32_1 NT_187521.1 50258
KI270765.1 CHR_HSCHR1_4_CTG31 chr1_KI270765v1_alt HSCHR1_4_CTG31 NT_187520.1 185285
KI270766.1 CHR_HSCHR1_2_CTG3 chr1_KI270766v1_alt HSCHR1_2_CTG3 NT_187517.1 256271
KI270767.1 CHR_HSCHR2_1_CTG15 chr2_KI270767v1_alt HSCHR2_1_CTG15 NT_187523.1 161578
KI270768.1 CHR_HSCHR2_3_CTG7_2 chr2_KI270768v1_alt HSCHR2_3_CTG7_2 NT_187528.1 110099
KI270769.1 CHR_HSCHR2_1_CTG1 chr2_KI270769v1_alt HSCHR2_1_CTG1 NT_187522.1 120616
KI270770.1 CHR_HSCHR2_2_CTG1 chr2_KI270770v1_alt HSCHR2_2_CTG1 NT_187525.1 136240
KI270771.1 CHR_HSCHR2_4_CTG7_2 chr2_KI270771v1_alt HSCHR2_4_CTG7_2 NT_187530.1 110395
KI270772.1 CHR_HSCHR2_1_CTG7 chr2_KI270772v1_alt HSCHR2_1_CTG7 NT_187524.1 133041
KI270773.1 CHR_HSCHR2_3_CTG1 chr2_KI270773v1_alt HSCHR2_3_CTG1 NT_187526.1 70887
KI270774.1 CHR_HSCHR2_4_CTG1 chr2_KI270774v1_alt HSCHR2_4_CTG1 NT_187529.1 223625
KI270775.1 CHR_HSCHR2_5_CTG7_2 chr2_KI270775v1_alt HSCHR2_5_CTG7_2 NT_187531.1 138019
KI270776.1 CHR_HSCHR2_3_CTG15 chr2_KI270776v1_alt HSCHR2_3_CTG15 NT_187527.1 174166
KI270777.1 CHR_HSCHR3_2_CTG2_1 chr3_KI270777v1_alt HSCHR3_2_CTG2_1 NT_187533.1 173649
KI270778.1 CHR_HSCHR3_3_CTG2_1 chr3_KI270778v1_alt HSCHR3_3_CTG2_1 NT_187536.1 248252
KI270779.1 CHR_HSCHR3_1_CTG3 chr3_KI270779v1_alt HSCHR3_1_CTG3 NT_187532.1 205312
KI270780.1 CHR_HSCHR3_4_CTG2_1 chr3_KI270780v1_alt HSCHR3_4_CTG2_1 NT_187537.1 224108
KI270781.1 CHR_HSCHR3_5_CTG2_1 chr3_KI270781v1_alt HSCHR3_5_CTG2_1 NT_187538.1 113034
KI270782.1 CHR_HSCHR3_2_CTG3 chr3_KI270782v1_alt HSCHR3_2_CTG3 NT_187534.1 162429
KI270783.1 CHR_HSCHR3_3_CTG1 chr3_KI270783v1_alt HSCHR3_3_CTG1 NT_187535.1 109187
KI270784.1 CHR_HSCHR3_9_CTG3 chr3_KI270784v1_alt HSCHR3_9_CTG3 NT_187539.1 184404
KI270785.1 CHR_HSCHR4_2_CTG12 chr4_KI270785v1_alt HSCHR4_2_CTG12 NT_187542.1 119912
KI270786.1 CHR_HSCHR4_3_CTG12 chr4_KI270786v1_alt HSCHR4_3_CTG12 NT_187543.1 244096
KI270787.1 CHR_HSCHR4_1_CTG8_1 chr4_KI270787v1_alt HSCHR4_1_CTG8_1 NT_187541.1 111943
KI270788.1 CHR_HSCHR4_4_CTG12 chr4_KI270788v1_alt HSCHR4_4_CTG12 NT_187544.1 158965
KI270789.1 CHR_HSCHR4_5_CTG12 chr4_KI270789v1_alt HSCHR4_5_CTG12 NT_187545.1 205944
KI270790.1 CHR_HSCHR4_1_CTG4 chr4_KI270790v1_alt HSCHR4_1_CTG4 NT_187540.1 220246
KI270791.1 CHR_HSCHR5_3_CTG1 chr5_KI270791v1_alt HSCHR5_3_CTG1 NT_187547.1 195710
KI270792.1 CHR_HSCHR5_4_CTG1 chr5_KI270792v1_alt HSCHR5_4_CTG1 NT_187548.1 179043
KI270793.1 CHR_HSCHR5_5_CTG1 chr5_KI270793v1_alt HSCHR5_5_CTG1 NT_187550.1 126136
KI270794.1 CHR_HSCHR5_6_CTG1 chr5_KI270794v1_alt HSCHR5_6_CTG1 NT_187551.1 164558
KI270795.1 CHR_HSCHR5_2_CTG5 chr5_KI270795v1_alt HSCHR5_2_CTG5 NT_187546.1 131892
KI270796.1 CHR_HSCHR5_4_CTG1_1 chr5_KI270796v1_alt HSCHR5_4_CTG1_1 NT_187549.1 172708
KI270797.1 CHR_HSCHR6_1_CTG4 chr6_KI270797v1_alt HSCHR6_1_CTG4 NT_187552.1 197536
KI270798.1 CHR_HSCHR6_1_CTG5 chr6_KI270798v1_alt HSCHR6_1_CTG5 NT_187553.1 271782
KI270799.1 CHR_HSCHR6_1_CTG6 chr6_KI270799v1_alt HSCHR6_1_CTG6 NT_187554.1 152148
KI270800.1 CHR_HSCHR6_1_CTG7 chr6_KI270800v1_alt HSCHR6_1_CTG7 NT_187555.1 175808
KI270801.1 CHR_HSCHR6_1_CTG8 chr6_KI270801v1_alt HSCHR6_1_CTG8 NT_187556.1 870480
KI270802.1 CHR_HSCHR6_1_CTG9 chr6_KI270802v1_alt HSCHR6_1_CTG9 NT_187557.1 75005
KI270803.1 CHR_HSCHR7_2_CTG6 chr7_KI270803v1_alt HSCHR7_2_CTG6 NT_187562.1 1111570
KI270804.1 CHR_HSCHR7_1_CTG1 chr7_KI270804v1_alt HSCHR7_1_CTG1 NT_187558.1 157952
KI270805.1 CHR_HSCHR7_1_CTG7 chr7_KI270805v1_alt HSCHR7_1_CTG7 NT_187560.1 209988
KI270806.1 CHR_HSCHR7_1_CTG4_4 chr7_KI270806v1_alt HSCHR7_1_CTG4_4 NT_187559.1 158166
KI270807.1 CHR_HSCHR7_2_CTG7 chr7_KI270807v1_alt HSCHR7_2_CTG7 NT_187563.1 126434
KI270808.1 CHR_HSCHR7_3_CTG6 chr7_KI270808v1_alt HSCHR7_3_CTG6 NT_187564.1 271455
KI270809.1 CHR_HSCHR7_2_CTG4_4 chr7_KI270809v1_alt HSCHR7_2_CTG4_4 NT_187561.1 209586
KI270810.1 CHR_HSCHR8_1_CTG7 chr8_KI270810v1_alt HSCHR8_1_CTG7 NT_187567.1 374415
KI270811.1 CHR_HSCHR8_1_CTG1 chr8_KI270811v1_alt HSCHR8_1_CTG1 NT_187565.1 292436
KI270812.1 CHR_HSCHR8_2_CTG1 chr8_KI270812v1_alt HSCHR8_2_CTG1 NT_187568.1 282736
KI270813.1 CHR_HSCHR8_3_CTG1 chr8_KI270813v1_alt HSCHR8_3_CTG1 NT_187570.1 300230
KI270814.1 CHR_HSCHR8_1_CTG6 chr8_KI270814v1_alt HSCHR8_1_CTG6 NT_187566.1 141812
KI270815.1 CHR_HSCHR8_2_CTG7 chr8_KI270815v1_alt HSCHR8_2_CTG7 NT_187569.1 132244
KI270816.1 CHR_HSCHR8_3_CTG7 chr8_KI270816v1_alt HSCHR8_3_CTG7 NT_187571.1 305841
KI270817.1 CHR_HSCHR8_4_CTG7 chr8_KI270817v1_alt HSCHR8_4_CTG7 NT_187573.1 158983
KI270818.1 CHR_HSCHR8_4_CTG1 chr8_KI270818v1_alt HSCHR8_4_CTG1 NT_187572.1 145606
KI270819.1 CHR_HSCHR8_5_CTG7 chr8_KI270819v1_alt HSCHR8_5_CTG7 NT_187574.1 133535
KI270820.1 CHR_HSCHR8_6_CTG7 chr8_KI270820v1_alt HSCHR8_6_CTG7 NT_187575.1 36640
KI270821.1 CHR_HSCHR8_8_CTG1 chr8_KI270821v1_alt HSCHR8_8_CTG1 NT_187576.1 985506
KI270822.1 CHR_HSCHR8_9_CTG1 chr8_KI270822v1_alt HSCHR8_9_CTG1 NT_187577.1 624492
KI270823.1 CHR_HSCHR9_1_CTG5 chr9_KI270823v1_alt HSCHR9_1_CTG5 NT_187578.1 439082
KI270824.1 CHR_HSCHR10_1_CTG3 chr10_KI270824v1_alt HSCHR10_1_CTG3 NT_187579.1 181496
KI270825.1 CHR_HSCHR10_1_CTG4 chr10_KI270825v1_alt HSCHR10_1_CTG4 NT_187580.1 188315
KI270826.1 CHR_HSCHR11_1_CTG2 chr11_KI270826v1_alt HSCHR11_1_CTG2 NT_187581.1 186169
KI270827.1 CHR_HSCHR11_1_CTG3 chr11_KI270827v1_alt HSCHR11_1_CTG3 NT_187582.1 67707
KI270829.1 CHR_HSCHR11_1_CTG5 chr11_KI270829v1_alt HSCHR11_1_CTG5 NT_187583.1 204059
KI270830.1 CHR_HSCHR11_1_CTG6 chr11_KI270830v1_alt HSCHR11_1_CTG6 NT_187584.1 177092
KI270831.1 CHR_HSCHR11_1_CTG7 chr11_KI270831v1_alt HSCHR11_1_CTG7 NT_187585.1 296895
KI270832.1 CHR_HSCHR11_1_CTG8 chr11_KI270832v1_alt HSCHR11_1_CTG8 NT_187586.1 210133
KI270833.1 CHR_HSCHR12_5_CTG2_1 chr12_KI270833v1_alt HSCHR12_5_CTG2_1 NT_187589.1 76061
KI270834.1 CHR_HSCHR12_6_CTG2_1 chr12_KI270834v1_alt HSCHR12_6_CTG2_1 NT_187590.1 119498
KI270835.1 CHR_HSCHR12_4_CTG2 chr12_KI270835v1_alt HSCHR12_4_CTG2 NT_187587.1 238139
KI270836.1 CHR_HSCHR12_7_CTG2_1 chr12_KI270836v1_alt HSCHR12_7_CTG2_1 NT_187591.1 56134
KI270837.1 CHR_HSCHR12_5_CTG2 chr12_KI270837v1_alt HSCHR12_5_CTG2 NT_187588.1 40090
KI270838.1 CHR_HSCHR13_1_CTG1 chr13_KI270838v1_alt HSCHR13_1_CTG1 NT_187592.1 306913
KI270839.1 CHR_HSCHR13_1_CTG2 chr13_KI270839v1_alt HSCHR13_1_CTG2 NT_187593.1 180306
KI270840.1 CHR_HSCHR13_1_CTG3 chr13_KI270840v1_alt HSCHR13_1_CTG3 NT_187594.1 191684
KI270841.1 CHR_HSCHR13_1_CTG4 chr13_KI270841v1_alt HSCHR13_1_CTG4 NT_187595.1 169134
KI270842.1 CHR_HSCHR13_1_CTG5 chr13_KI270842v1_alt HSCHR13_1_CTG5 NT_187596.1 37287
KI270843.1 CHR_HSCHR13_1_CTG6 chr13_KI270843v1_alt HSCHR13_1_CTG6 NT_187597.1 103832
KI270844.1 CHR_HSCHR14_1_CTG1 chr14_KI270844v1_alt HSCHR14_1_CTG1 NT_187598.1 322166
KI270845.1 CHR_HSCHR14_2_CTG1 chr14_KI270845v1_alt HSCHR14_2_CTG1 NT_187599.1 180703
KI270846.1 CHR_HSCHR14_3_CTG1 chr14_KI270846v1_alt HSCHR14_3_CTG1 NT_187600.1 1351393
KI270847.1 CHR_HSCHR14_7_CTG1 chr14_KI270847v1_alt HSCHR14_7_CTG1 NT_187601.1 1511111
KI270848.1 CHR_HSCHR15_1_CTG3 chr15_KI270848v1_alt HSCHR15_1_CTG3 NT_187603.1 327382
KI270849.1 CHR_HSCHR15_3_CTG8 chr15_KI270849v1_alt HSCHR15_3_CTG8 NT_187605.1 244917
KI270850.1 CHR_HSCHR15_5_CTG8 chr15_KI270850v1_alt HSCHR15_5_CTG8 NT_187606.1 430880
KI270851.1 CHR_HSCHR15_3_CTG3 chr15_KI270851v1_alt HSCHR15_3_CTG3 NT_187604.1 263054
KI270852.1 CHR_HSCHR15_1_CTG1 chr15_KI270852v1_alt HSCHR15_1_CTG1 NT_187602.1 478999
KI270853.1 CHR_HSCHR16_1_CTG1 chr16_KI270853v1_alt HSCHR16_1_CTG1 NT_187607.1 2659700
KI270854.1 CHR_HSCHR16_CTG2 chr16_KI270854v1_alt HSCHR16_CTG2 NT_187610.1 134193
KI270855.1 CHR_HSCHR16_3_CTG1 chr16_KI270855v1_alt HSCHR16_3_CTG1 NT_187608.1 232857
KI270856.1 CHR_HSCHR16_4_CTG1 chr16_KI270856v1_alt HSCHR16_4_CTG1 NT_187609.1 63982
KI270857.1 CHR_HSCHR17_7_CTG4 chr17_KI270857v1_alt HSCHR17_7_CTG4 NT_187614.1 2877074
KI270858.1 CHR_HSCHR17_8_CTG4 chr17_KI270858v1_alt HSCHR17_8_CTG4 NT_187615.1 235827
KI270859.1 CHR_HSCHR17_9_CTG4 chr17_KI270859v1_alt HSCHR17_9_CTG4 NT_187616.1 108763
KI270860.1 CHR_HSCHR17_1_CTG9 chr17_KI270860v1_alt HSCHR17_1_CTG9 NT_187612.1 178921
KI270861.1 CHR_HSCHR17_1_CTG2 chr17_KI270861v1_alt HSCHR17_1_CTG2 NT_187611.1 196688
KI270862.1 CHR_HSCHR17_2_CTG2 chr17_KI270862v1_alt HSCHR17_2_CTG2 NT_187613.1 391357
KI270863.1 CHR_HSCHR18_3_CTG2_1 chr18_KI270863v1_alt HSCHR18_3_CTG2_1 NT_187617.1 167999
KI270864.1 CHR_HSCHR18_4_CTG1_1 chr18_KI270864v1_alt HSCHR18_4_CTG1_1 NT_187618.1 111737
KI270865.1 CHR_HSCHR19_4_CTG2 chr19_KI270865v1_alt HSCHR19_4_CTG2 NT_187621.1 52969
KI270866.1 CHR_HSCHR19_2_CTG3_1 chr19_KI270866v1_alt HSCHR19_2_CTG3_1 NT_187619.1 43156
KI270867.1 CHR_HSCHR19_3_CTG3_1 chr19_KI270867v1_alt HSCHR19_3_CTG3_1 NT_187620.1 233762
KI270868.1 CHR_HSCHR19_5_CTG2 chr19_KI270868v1_alt HSCHR19_5_CTG2 NT_187622.1 61734
KI270869.1 CHR_HSCHR20_1_CTG2 chr20_KI270869v1_alt HSCHR20_1_CTG2 NT_187623.1 118774
KI270870.1 CHR_HSCHR20_1_CTG3 chr20_KI270870v1_alt HSCHR20_1_CTG3 NT_187624.1 183433
KI270871.1 CHR_HSCHR20_1_CTG4 chr20_KI270871v1_alt HSCHR20_1_CTG4 NT_187625.1 58661
KI270872.1 CHR_HSCHR21_5_CTG2 chr21_KI270872v1_alt HSCHR21_5_CTG2 NT_187626.1 82692
KI270873.1 CHR_HSCHR21_6_CTG1_1 chr21_KI270873v1_alt HSCHR21_6_CTG1_1 NT_187627.1 143900
KI270874.1 CHR_HSCHR21_8_CTG1_1 chr21_KI270874v1_alt HSCHR21_8_CTG1_1 NT_187628.1 166743
KI270875.1 CHR_HSCHR22_1_CTG3 chr22_KI270875v1_alt HSCHR22_1_CTG3 NT_187629.1 259914
KI270876.1 CHR_HSCHR22_1_CTG4 chr22_KI270876v1_alt HSCHR22_1_CTG4 NT_187630.1 263666
KI270877.1 CHR_HSCHR22_1_CTG5 chr22_KI270877v1_alt HSCHR22_1_CTG5 NT_187631.1 101331
KI270878.1 CHR_HSCHR22_1_CTG6 chr22_KI270878v1_alt HSCHR22_1_CTG6 NT_187632.1 186262
KI270879.1 CHR_HSCHR22_1_CTG7 chr22_KI270879v1_alt HSCHR22_1_CTG7 NT_187633.1 304135
KI270880.1 CHR_HSCHRX_1_CTG3 chrX_KI270880v1_alt HSCHRX_1_CTG3 NT_187634.1 284869
KI270881.1 CHR_HSCHRX_2_CTG12 chrX_KI270881v1_alt HSCHRX_2_CTG12 NT_187635.1 144206
KI270882.1 CHR_HSCHR19KIR_FH15_B_HAP_CTG3_1 chr19_KI270882v1_alt HSCHR19KIR_FH15_B_HAP_CTG3_1 NT_187636.1 248807
KI270883.1 CHR_HSCHR19KIR_G085_A_HAP_CTG3_1 chr19_KI270883v1_alt HSCHR19KIR_G085_A_HAP_CTG3_1 NT_187637.1 170399
KI270884.1 CHR_HSCHR19KIR_G085_BA1_HAP_CTG3_1 chr19_KI270884v1_alt HSCHR19KIR_G085_BA1_HAP_CTG3_1 NT_187638.1 157053
KI270885.1 CHR_HSCHR19KIR_G248_A_HAP_CTG3_1 chr19_KI270885v1_alt HSCHR19KIR_G248_A_HAP_CTG3_1 NT_187639.1 171027
KI270886.1 CHR_HSCHR19KIR_G248_BA2_HAP_CTG3_1 chr19_KI270886v1_alt HSCHR19KIR_G248_BA2_HAP_CTG3_1 NT_187640.1 204239
KI270887.1 CHR_HSCHR19KIR_GRC212_AB_HAP_CTG3_1 chr19_KI270887v1_alt HSCHR19KIR_GRC212_AB_HAP_CTG3_1 NT_187641.1 209512
KI270888.1 CHR_HSCHR19KIR_GRC212_BA1_HAP_CTG3_1 chr19_KI270888v1_alt HSCHR19KIR_GRC212_BA1_HAP_CTG3_1 NT_187642.1 155532
KI270889.1 CHR_HSCHR19KIR_LUCE_A_HAP_CTG3_1 chr19_KI270889v1_alt HSCHR19KIR_LUCE_A_HAP_CTG3_1 NT_187643.1 170698
KI270890.1 CHR_HSCHR19KIR_LUCE_BDEL_HAP_CTG3_1 chr19_KI270890v1_alt HSCHR19KIR_LUCE_BDEL_HAP_CTG3_1 NT_187644.1 184499
KI270891.1 CHR_HSCHR19KIR_RSH_A_HAP_CTG3_1 chr19_KI270891v1_alt HSCHR19KIR_RSH_A_HAP_CTG3_1 NT_187645.1 170680
KI270892.1 CHR_HSCHR1_ALT2_1_CTG32_1 chr1_KI270892v1_alt HSCHR1_ALT2_1_CTG32_1 NT_187646.1 162212
KI270893.1 CHR_HSCHR2_2_CTG15 chr2_KI270893v1_alt HSCHR2_2_CTG15 NT_187647.1 161218
KI270894.1 CHR_HSCHR2_2_CTG7 chr2_KI270894v1_alt HSCHR2_2_CTG7 NT_187648.1 214158
KI270895.1 CHR_HSCHR3_3_CTG3 chr3_KI270895v1_alt HSCHR3_3_CTG3 NT_187649.1 162896
KI270896.1 CHR_HSCHR4_6_CTG12 chr4_KI270896v1_alt HSCHR4_6_CTG12 NT_187650.1 378547
KI270897.1 CHR_HSCHR5_1_CTG1_1 chr5_KI270897v1_alt HSCHR5_1_CTG1_1 NT_187651.1 1144418
KI270898.1 CHR_HSCHR5_3_CTG5 chr5_KI270898v1_alt HSCHR5_3_CTG5 NT_187652.1 130957
KI270899.1 CHR_HSCHR7_2_CTG1 chr7_KI270899v1_alt HSCHR7_2_CTG1 NT_187653.1 190869
KI270900.1 CHR_HSCHR8_5_CTG1 chr8_KI270900v1_alt HSCHR8_5_CTG1 NT_187654.1 318687
KI270901.1 CHR_HSCHR8_6_CTG1 chr8_KI270901v1_alt HSCHR8_6_CTG1 NT_187655.1 136959
KI270902.1 CHR_HSCHR11_2_CTG1 chr11_KI270902v1_alt HSCHR11_2_CTG1 NT_187656.1 106711
KI270903.1 CHR_HSCHR11_2_CTG1_1 chr11_KI270903v1_alt HSCHR11_2_CTG1_1 NT_187657.1 214625
KI270904.1 CHR_HSCHR12_3_CTG2 chr12_KI270904v1_alt HSCHR12_3_CTG2 NT_187658.1 572349
KI270905.1 CHR_HSCHR15_4_CTG8 chr15_KI270905v1_alt HSCHR15_4_CTG8 NT_187660.1 5161414
KI270906.1 CHR_HSCHR15_2_CTG3 chr15_KI270906v1_alt HSCHR15_2_CTG3 NT_187659.1 196384
KI270907.1 CHR_HSCHR17_2_CTG1 chr17_KI270907v1_alt HSCHR17_2_CTG1 NT_187662.1 137721
KI270908.1 CHR_HSCHR17_2_CTG5 chr17_KI270908v1_alt HSCHR17_2_CTG5 NT_187663.1 1423190
KI270909.1 CHR_HSCHR17_10_CTG4 chr17_KI270909v1_alt HSCHR17_10_CTG4 NT_187661.1 325800
KI270910.1 CHR_HSCHR17_3_CTG2 chr17_KI270910v1_alt HSCHR17_3_CTG2 NT_187664.1 157099
KI270911.1 CHR_HSCHR18_ALT2_CTG2_1 chr18_KI270911v1_alt HSCHR18_ALT2_CTG2_1 NT_187666.1 157710
KI270912.1 CHR_HSCHR18_ALT21_CTG2_1 chr18_KI270912v1_alt HSCHR18_ALT21_CTG2_1 NT_187665.1 174061
KI270913.1 CHR_HSCHRX_2_CTG3 chrX_KI270913v1_alt HSCHRX_2_CTG3 NT_187667.1 274009
KI270914.1 CHR_HSCHR19KIR_RSH_BA2_HAP_CTG3_1 chr19_KI270914v1_alt HSCHR19KIR_RSH_BA2_HAP_CTG3_1 NT_187668.1 205194
KI270915.1 CHR_HSCHR19KIR_T7526_A_HAP_CTG3_1 chr19_KI270915v1_alt HSCHR19KIR_T7526_A_HAP_CTG3_1 NT_187669.1 170665
KI270916.1 CHR_HSCHR19KIR_T7526_BDEL_HAP_CTG3_1 chr19_KI270916v1_alt HSCHR19KIR_T7526_BDEL_HAP_CTG3_1 NT_187670.1 184516
KI270917.1 CHR_HSCHR19KIR_ABC08_A1_HAP_CTG3_1 chr19_KI270917v1_alt HSCHR19KIR_ABC08_A1_HAP_CTG3_1 NT_187671.1 190932
KI270918.1 CHR_HSCHR19KIR_ABC08_AB_HAP_C_P_CTG3_1 chr19_KI270918v1_alt HSCHR19KIR_ABC08_AB_HAP_C_P_CTG3_1 NT_187672.1 123111
KI270919.1 CHR_HSCHR19KIR_ABC08_AB_HAP_T_P_CTG3_1 chr19_KI270919v1_alt HSCHR19KIR_ABC08_AB_HAP_T_P_CTG3_1 NT_187673.1 170701
KI270920.1 CHR_HSCHR19KIR_FH05_A_HAP_CTG3_1 chr19_KI270920v1_alt HSCHR19KIR_FH05_A_HAP_CTG3_1 NT_187674.1 198005
KI270921.1 CHR_HSCHR19KIR_FH05_B_HAP_CTG3_1 chr19_KI270921v1_alt HSCHR19KIR_FH05_B_HAP_CTG3_1 NT_187675.1 282224
KI270922.1 CHR_HSCHR19KIR_FH06_A_HAP_CTG3_1 chr19_KI270922v1_alt HSCHR19KIR_FH06_A_HAP_CTG3_1 NT_187676.1 187935
KI270923.1 CHR_HSCHR19KIR_FH06_BA1_HAP_CTG3_1 chr19_KI270923v1_alt HSCHR19KIR_FH06_BA1_HAP_CTG3_1 NT_187677.1 189352
KI270924.1 CHR_HSCHR3_4_CTG3 chr3_KI270924v1_alt HSCHR3_4_CTG3 NT_187678.1 166540
KI270925.1 CHR_HSCHR4_7_CTG12 chr4_KI270925v1_alt HSCHR4_7_CTG12 NT_187679.1 555799
KI270926.1 CHR_HSCHR8_7_CTG1 chr8_KI270926v1_alt HSCHR8_7_CTG1 NT_187680.1 229282
KI270927.1 CHR_HSCHR11_3_CTG1 chr11_KI270927v1_alt HSCHR11_3_CTG1 NT_187681.1 218612
KI270928.1 CHR_HSCHR22_3_CTG1 chr22_KI270928v1_alt HSCHR22_3_CTG1 NT_187682.1 176103
KI270929.1 CHR_HSCHR19KIR_FH08_A_HAP_CTG3_1 chr19_KI270929v1_alt HSCHR19KIR_FH08_A_HAP_CTG3_1 NT_187683.1 186203
KI270930.1 CHR_HSCHR19KIR_FH08_BAX_HAP_CTG3_1 chr19_KI270930v1_alt HSCHR19KIR_FH08_BAX_HAP_CTG3_1 NT_187684.1 200773
KI270931.1 CHR_HSCHR19KIR_FH13_A_HAP_CTG3_1 chr19_KI270931v1_alt HSCHR19KIR_FH13_A_HAP_CTG3_1 NT_187685.1 170148
KI270932.1 CHR_HSCHR19KIR_FH13_BA2_HAP_CTG3_1 chr19_KI270932v1_alt HSCHR19KIR_FH13_BA2_HAP_CTG3_1 NT_187686.1 215732
KI270933.1 CHR_HSCHR19KIR_FH15_A_HAP_CTG3_1 chr19_KI270933v1_alt HSCHR19KIR_FH15_A_HAP_CTG3_1 NT_187687.1 170537
KI270934.1 CHR_HSCHR3_5_CTG3 chr3_KI270934v1_alt HSCHR3_5_CTG3 NT_187688.1 163458
KI270935.1 CHR_HSCHR3_6_CTG3 chr3_KI270935v1_alt HSCHR3_6_CTG3 NT_187689.1 197351
KI270936.1 CHR_HSCHR3_7_CTG3 chr3_KI270936v1_alt HSCHR3_7_CTG3 NT_187690.1 164170
KI270937.1 CHR_HSCHR3_8_CTG3 chr3_KI270937v1_alt HSCHR3_8_CTG3 NT_187691.1 165607
KI270938.1 CHR_HSCHR19_4_CTG3_1 chr19_KI270938v1_alt HSCHR19_4_CTG3_1 NT_187693.1 1066800
準備
180502時点で、UCSCのGRCh38/hg38のゲノムのversionはGCA_000001405.15 (Dec. 2013)なので、これとEnsemblのbiomartを併せる必要がある。きっとなんか良いツールがある気もするけど、データの中身を見ながら泥臭くやる。
[UCSC](http://genome.ucsc.edu/cgi-bin/hgTracks?hgsid=666918361_uSAYsrdidZ665KXQFmDHDyZsP6qI&db=hg38&position=lastDbPos,"Dec.2013 (GRCh38/hg38)")のページをみると、
UCSC Genome Browser assembly ID: hg38
Sequencing/Assembly provider ID: Genome Reference Consortium Human GRCh38 (GCA_000001405.15)
Assembly date: Dec. 2013
Accession ID: GCA_000001405.15
になっていて、アセンブリのAccession IDがGCA_000001405.15であることがわかる。
NCBIでこれを探す。
https://www.ncbi.nlm.nih.gov/assembly/GCA_000001405.15/
該当するのはGCF_000001405.26。ページにもassembly_report.txtにも、
# GenBank assembly accession: GCA_000001405.15
# RefSeq assembly accession: GCF_000001405.26
# RefSeq assembly and GenBank assemblies identical: yes
になっている。
Ensemblのarchiveはこんな感じになっている。（180502時点のLatestはrelease 92なのでGRCh38.p12）
Ensembl GRCh37: Full Feb 2014 archive with BLAST, VEP and BioMart
Ensembl 91: Dec 2017 (GRCh38.p10)
Ensembl 90: Aug 2017 (GRCh38.p10) - patched/updated gene set Jun 2017
Ensembl 89: May 2017 (GRCh38.p10) - patched/updated gene set Jan 2017
Ensembl 88: Mar 2017 (GRCh38.p10)
Ensembl 87: Dec 2016 (GRCh38.p7)
Ensembl 86: Oct 2016 (GRCh38.p7)
Ensembl 85: Jul 2016 (GRCh38.p7) - patched/updated gene set Jun 2016
Ensembl 84: Mar 2016 (GRCh38.p5)
Ensembl 83: Dec 2015 (GRCh38.p5) - patched/updated gene set Oct 2015
Ensembl 82: Sep 2015 (GRCh38.p3)
Ensembl 81: Jul 2015 (GRCh38.p3) - patched/updated gene set Jun 2015
Ensembl 80: May 2015 (GRCh38.p2) - patched/updated gene set Jan 2015
Ensembl 79: Mar 2015 (GRCh38.p2)
Ensembl 78: Dec 2014 (GRCh38)
Ensembl 77: Oct 2014 (GRCh38) - patched/updated gene set Aug 2014
Ensembl 76: Aug 2014 (GRCh38) - gene set updated Jul 2014
Ensembl 75: Feb 2014 (GRCh37.p13)
Ensembl 74: Dec 2013 (GRCh37.p13) - patched/updated gene set Sep 2013
Ensembl 67: May 2012 (GRCh37.p7) - patched/updated gene set Feb 2012
Ensembl 54: May 2009 (NCBI 36) - patched/updated gene set Oct 2008
EnsemblのGRCh38/hg38の最終版はEnsembl release 78になる。
それ以降のreleasaeはpatchがつくのでめんどくさい。
ためしに[Ensemblのarchiveのbiomart](http://Dec2014.archive.ensembl.org/biomart/martview,"release 78 biomart")からデータ落とすと、HSCHR10_1_CTG1がCHR_HSCHR10_1_CTG1みたいに「HSCHR」で始まるものにはすべて「CHR_」がついてるし、「LRG_...」とかなに？ってなるし、CHR_HG142_HG150_NOVEL_TESTとかCHR_HG151_NOVEL_TESTとかまでいる。
ただEnsemblのGRCh38/hg38だと、染色体名がちょっとNCBIと違う感じになってたりする。しかEnsembl（というかEBIのENA）のGCA_000001405.15_sequence_report.txtでは同じになってるのに、biomartで落としてくると変わってる。。。
| Ensembl78 GRCh38/hg38 | UCSC GRCh38/hg38 | NCBI (Name, GenBank, RefSeq) |
|---|---|---|
| 1 | chr1 | 1, CM000663.2, NC_000001.11 |
| MT | chrM | MT, J01415.2, NC_012920.1 |
| CHR_HSCHR1_CTG1_UNLOCALIZED | chr1_KI270706v1_random | HSCHR1_CTG1_UNLOCALIZED, KI270706.1, T_187361.1 |
| CHR_HSCHR2_RANDOM_CTG1 | chr2_KI270715v1_random | HSCHR2_RANDOM_CTG1, KI270715.1, NT_187370.1 |
| GL000008.2 | chr4_GL000008v2_random | HSCHR4_RANDOM_CTG4, GL000008.2, NT_113793.3 |
| GL000195.1 | chrUn_GL000195v1 | HSCHRUN_RANDOM_CTG1, GL000195.1, NT_113901.1 |
| KI270734.1 | chr22_KI270734v1_random | HSCHR22_UNLOCALIZED_CTG4, KI270734.1, NT_187389.1 |
| KI270442.1 | chrUn_KI270442v1 | HSCHRUN_RANDOM_124, KI270442.1, NT_187420.1 |
作業
ひとまず、NCBIで該当するGCF_000001405.26のassembly_reportから情報を流用する。
これは実際はUCSCの_assembly_report.txtと同一なのと、このなかにSequence-NameとGenBank-AccnとRefSeq-AccnとSequence-LengthがUCSC-style-nameと一緒にそろっている。「HSCHR→CHR_HSCHR」だけ気をつければよいのでは。
EnsemblのGCA_000001405.15_sequence_report.txtと、NCBIのGCF_000001405.26_GRCh38_assembly_report.txtをみると、GenBank accnはどちらもそろっている。あとlengthもある。UCSCもhg38.chrom.sizes.txtがあるので、落としもらしの確認はできる。
shellであつかうときは、NCBIのGCF_000001405.26_GRCh38_assembly_report.txtが改行アレなので、nkf --unixとかしておく。
GenBank accnでjoinしてlengthと名前を確認、みたいな感じか。
$ less NCBI_GRCh38_GCA_000001405.15/GCF_000001405.26_GRCh38_assembly_report.txt | nkf --unix | grep -v "^\#" | perl -ne 'chomp;@l=split(/\t/);print join("\t",@l[4,9,0,2,6,8])."\n";' | sort -u > temp_ncbi.txt
CM000663.2 chr1 1 1 NC_000001.11 248956422
CM000664.2 chr2 2 2 NC_000002.12 242193529
CM000665.2 chr3 3 3 NC_000003.12 198295559
CM000666.2 chr4 4 4 NC_000004.12 190214555
CM000667.2 chr5 5 5 NC_000005.10 181538259
...
KI270935.1 chr3_KI270935v1_alt HSCHR3_6_CTG3 3 NT_187689.1 197351
KI270936.1 chr3_KI270936v1_alt HSCHR3_7_CTG3 3 NT_187690.1 164170
KI270937.1 chr3_KI270937v1_alt HSCHR3_8_CTG3 3 NT_187691.1 165607
KI270938.1 chr19_KI270938v1_alt HSCHR19_4_CTG3_1 19 NT_187693.1 1066800
$ less Ensembl_release78_GRCh38_GCA_000001405.15/GCA_000001405.15_sequence_report.txt | nkf --unix | grep -v "^accession" | perl -ne 'chomp;@l=split(/\t/);$l[1]=~s/HSCHR/CHR_HSCHR/;print join("\t",@l[0,1,4,2])."\n";' | sort -u > temp_ensembl.txt
CM000663.2 1 1 248956422
CM000664.2 2 2 242193529
CM000665.2 3 3 198295559
CM000666.2 4 4 190214555
...
KI270935.1 CHR_HSCHR3_6_CTG3 3 197351
KI270936.1 CHR_HSCHR3_7_CTG3 3 164170
KI270937.1 CHR_HSCHR3_8_CTG3 3 165607
KI270938.1 CHR_HSCHR19_4_CTG3_1 19 1066800
$ less UCSC_hg38_GCA_000001405.15/hg38.chrom.sizes.txt | sort -u > temp_ucsc.txt
chr1 248956422
chr10 133797422
chr10_GL383545v1_alt 179254
chr10_GL383546v1_alt 309802
...
chrX_KI270881v1_alt 144206
chrX_KI270913v1_alt 274009
chrY 57227415
chrY_KI270740v1_random 37240
$ wc temp_*
455 1820 18907 temp_ensembl.txt
455 2730 31541 temp_ncbi.txt
455 910 11672 temp_ucsc.txt
1365 5460 60408 total
$ join -a 1 -t " " temp_ensembl.txt temp_ncbi.txt | perl -ne 'chomp;@l=split(/\t/);print join("\t",($l[4],@l))."\n";' | sort -u > temp_ens_ncbi.txt
$ wc temp_*
455 4550 54096 temp_ens_ncbi.txt
455 1820 18907 temp_ensembl.txt
455 2730 31541 temp_ncbi.txt
455 910 11672 temp_ucsc.txt
1820 10010 114504 total
$ join -a 1 -t " " temp_ens_ncbi.txt temp_ucsc.txt | cut -f 2- | sort -u > TABLE_hg38_GRCh38_chr_ens78_ncbi_ucsc.txt
$ wc TABLE_hg38_GRCh38_chr_ens78_ncbi_ucsc.txt
455 4550 48466 TABLE_hg38_GRCh38_chr_ens78_ncbi_ucsc.tx
いちおうchoromosome lengthが同じか確認。めんどくさいので横着する。
$ less TABLE_hg38_GRCh38_chr_ens78_ncbi_ucsc.txt | cut -f4,9,10
248956422 248956422 248956422
242193529 242193529 242193529
198295559 198295559 198295559
...
164170 164170 164170
165607 165607 165607
1066800 1066800 1066800
$ diff --report <(less TABLE_hg38_GRCh38_chr_ens78_ncbi_ucsc.txt | cut -f4) <(less TABLE_hg38_GRCh38_chr_ens78_ncbi_ucsc.txt | cut -f9)
Files /dev/fd/11 and /dev/fd/12 are identical
$ diff --report <(less TABLE_hg38_GRCh38_chr_ens78_ncbi_ucsc.txt | cut -f4) <(less TABLE_hg38_GRCh38_chr_ens78_ncbi_ucsc.txt | cut -f10)
Files /dev/fd/11 and /dev/fd/12 are identical
ただbiomartのdataにあてて確認してみると出来ないのがけっこうある。biomartで適当にダウンロードして、あわせてみる。
$ gzcat martquery_0501xxxxxx_xxx.txt.gz | grep -v "^Chromosome" | cut -f1 | sort -u > list_ens78_biomart_chr.txt
$ less list_ens78_biomart_chr.txt | wc
802 802 9134
$ less list_ens78_biomart_chr.txt | grep -v LRG | grep -v _NOVEL_TEST | wc
268 268 4931
そもそもbiomartのentryが実際はすくない。
$ join -a 1 <(less list_ens78_biomart_chr.txt | sort -u) <(less TABLE_hg38_GRCh38_chr_ens78_ncbi_ucsc.txt | cut -f2 | sort -u | perl -pe 's/$/\tOK/;') | grep -v OK$ | grep -v LRG | grep -v _NOVEL_TEST > list_ens78_biomart_chr_unmatched.txt
$ wc list_ens78_biomart_chr_unmatched.txt
34 34 374 list_ens78_biomart_chr_unmatched.txt
GL000008.2
GL000009.2
GL000194.1
...
KI270744.1
KI270750.1
KI270752.1
これらはGenbank accnのままなのか。別途なんとかしないとだめか。あとLRGとかもちゃんとしなきゃだめか。
$ less TABLE_hg38_GRCh38_chr_ens78_ncbi_ucsc.txt | grep -v -f list_ens78_biomart_chr_unmatched.txt > temp_TABLE_matched.txt
$ less TABLE_hg38_GRCh38_chr_ens78_ncbi_ucsc.txt | grep -f list_ens78_biomart_chr_unmatched.txt > temp_TABLE_unmatched.txt
$ wc temp_TABLE_matched.txt temp_TABLE_unmatched.txt
421 4210 44417 temp_TABLE_matched.txt
34 340 4049 temp_TABLE_unmatched.txt
455 4550 48466 total
$ cat temp_TABLE_matched.txt <(cat temp_TABLE_unmatched.txt | perl -ne 'chomp;@l=split(/\t/);print join("\t",@l[0,0,2..$#l])."\n";') | sort -u > TABLE_hg38_GRCh38_chr_ens78_ncbi_ucsc_modified.txt
$ wc TABLE_hg38_GRCh38_chr_ens78_ncbi_ucsc_modified.txt
455 4550 47939 TABLE_hg38_GRCh38_chr_ens78_ncbi_ucsc_modified.txt
$ join <(less list_ens78_biomart_chr.txt | sort -u) <(less TABLE_hg38_GRCh38_chr_ens78_ncbi_ucsc_modified.txt | cut -f2 | sort -u | perl -pe 's/$/\tOK/;' | sort -u) | grep OK | wc
268 536 5735
これでもうライフゼロ。いちおうコンバートできるだけのTABLEにはなったのではないか。。。
上述のTableを出力する。
less TABLE_hg38_GRCh38_chr_ens78_ncbi_ucsc_modified.txt | cut -f1,2,5,6,8,9
あとがき
あとはこのTABLEをつかって、以下みたいなhashの対応表つくって入れ替えちゃえばよい。
$ cut -f2,5 TABLE_hg38_GRCh38_chr_ens78_ncbi_ucsc_modified.txt | perl -pe 's/^/\"/;s/\t/\"\ \=\>\ \"/;s/$/\"\,/;'
"1" => "chr1",
"2" => "chr2",
"3" => "chr3",
...
"CHR_HSCHR3_7_CTG3" => "chr3_KI270936v1_alt",
"CHR_HSCHR3_8_CTG3" => "chr3_KI270937v1_alt",
"CHR_HSCHR19_4_CTG3_1" => "chr19_KI270938v1_alt",
ダウンロードしたbiomartのデータなんかは、LRGとかそういうのは該当するhashがなければすべてNotAvailableみたいな名前に変換して、grep -vとかで一気にomitしちゃえばいいのでは、という目論見。
LRGとかは今後の課題。こことかこことかのデータつかってコンバートするようにするか。そもそもLiftOverとかそういう機能ないのかな。。。