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map型を使おう

proto3 からmap型が実装されました。
proto2 にもバックポートされています。

独自に KVPair を定義するよりよいでしょう。

事前に構造がわからない任意のデータを表現したい場合は、google.protobuf.Any.Mapを使用してください。
https://protobuf.dev/reference/protobuf/textformat-spec/#any

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