##cv_trackerのビルドエラー
...
fatal error: caffe/caffe.hpp: No such file or directory
https://github.com/BVLC/caffe/pull/1667
には、
Proto-files
Now protobuf files ARE NOT copied to <caffe_root>/include/caffe/proto anymore. Instead they are generated to <build_dir>/include/caffe/proto. Know one may include old headers, but this is interest rates to payback of technical debt appeared due to incorrect original cmake scripts design. Also removed them from .gitignore
とあるので、
set(SSD_CAFFE_PATH "$ENV{HOME}/ssdcaffe/distribute")
を
set(SSD_CAFFE_PATH "$ENV{HOME}/ssdcaffe/build:$ENV{HOME}/ssdcaffe/distribute")
に変える。