メモ代わりに残します。
A to B でマージする場合に deleted by them が発生したけど追加したい場合、
一度 rm --cached して add してあげれば良い。
git checkout B
git merge A
#=> deleted by theme: hoge_file
git rm --cached hoge_file
git add hoge_file
#=> new file: hoge_file
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