インストールしようとしていたのはこれ。
1. 環境
以下の環境で作業を行いました。
| item | value |
|---|---|
| Machine | MacBookPro |
| OS | MacOS Ventura13.6 |
| CPU | Apple M2 |
| Python | 3.10.11 |
2. 結論
結論だけあればいいんじゃい！！という方のために先に結論を書きました。
2-1. requirements.txt 修正
以下のように requirements.txt を修正して、
requirements.txt
+Cython==3.0.4
glfw==2.5.0
GPy==1.10.0
GPyOpt @ git+https://github.com/yunshengtian/GPyOpt@5fc1188ffdefea9a3bc7964a9414d4922603e904
gym==0.22.0
-h5py==3.6.0
+h5py==3.10.0
imageio==2.14.1
matplotlib==3.5.1
neat-python @ git+https://github.com/yunshengtian/neat-python@2762ab630838520ca6c03a866e8a158f592b0370
numpy==1.21.5
opencv-python==4.5.5.62
Pillow==9.0.0
pybind11==2.9.0
pygifsicle==1.0.5
-PyOpenGL==3.1.5
-PyOpenGL-accelerate==3.1.5
-torch==1.10.2
+PyOpenGL @ git+https://github.com/mcfletch/pyopengl.git@release-3.1.8#egg=PyOpenGL
+PyOpenGL_accelerate @ git+https://github.com/mcfletch/pyopengl.git@release-3.1.8#egg=PyOpenGL_accelerate&subdirectory=accelerate
+torch==1.12.1
ttkbootstrap==1.5.1
typing==3.7.4.3
2-2. 書籍の公式サイトの手順に従う
以下の記事の、
macOSへのインストール手順
に従って作業すればOK。
上記 requirements.txt 変更点それぞれの理由などを知りたい人は「3.」も読んでみてください。
補足
もしかしたら、
$ brew install hdf5
$ export HDF5_DIR="$(brew --prefix hdf5)"
も必要かもしれないけれど、おそらく必要ないです。
色々やってみたけど、それでも引っかかって動かなかった時に、念の為これらも実行してみる、という扱いで良いと思います。
- 参考
error: Unable to load dependency HDF5, make sure HDF5 is installed properly
3. エラー発生状況の詳細
3-1. テキストⅷページ記載の方法で失敗
テキスト（「Python ではじめるオープンエンドな進化的アルゴリズム」）に書かれている conda env create -f environment.yml を実行しようとしたけど、以下のようなエラーが出る。
evogym % conda env create -f environment.yml
Channels:
- defaults
- conda-forge
Platform: osx-arm64
Collecting package metadata (repodata.json): done
Solving environment: done
Downloading and Extracting Packages:
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
Installing pip dependencies: \ Ran pip subprocess with arguments:
...
note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for h5py
ERROR: ERROR: Failed to build installable wheels for some pyproject.toml based projects (gpy, h5py)
failed
CondaEnvException: Pip failed
これは h5py の install 失敗エラーの状況。
色々試したけどうんともすんとも言わなかったので、 conda 環境を削除しました。
# conda 環境の削除
% conda remove -n evogym --all
3-2. 各エラーに対する対処方法
以下の記事の手順に従いましたが、
それでもいくつかエラーが出てきたので、細かい対処法を以下に記していきます。
3-2-1. torch
torch のインストールでエラー。
ERROR: Could not find a version that satisfies the requirement torch==1.10.2 (from versions: 1.11.0, 1.12.0, 1.12.1, 1.13.0, 1.13.1, 2.0.0, 2.0.1, 2.1.0, 2.1.1, 2.1.2, 2.2.0, 2.2.1, 2.2.2, 2.3.0, 2.3.1, 2.4.0, 2.4.1)
ERROR: No matching distribution found for torch==1.10.2
1.10.2 などというバージョンはないらしい。1.10.2 からバージョンを上げすぎると動かなくなるかも、と思ったので、少しだけバージョンをあげて動かした。
requirements.txt
torch==1.12.1
これで行けた。
3-2-2. h5py
h5py のインストールでエラー。
エラー全文は長すぎるので畳んであります。
エラー文
Building wheels for collected packages: h5py
Building wheel for h5py (pyproject.toml) ... error
error: subprocess-exited-with-error
× Building wheel for h5py (pyproject.toml) did not run successfully.
│ exit code: 1
╰─> [530 lines of output]
running bdist_wheel
running build
running build_py
creating build/lib.macosx-13.5-arm64-cpython-310/h5py
copying h5py/h5py_warnings.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py
copying h5py/version.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py
copying h5py/__init__.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py
copying h5py/ipy_completer.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py
creating build/lib.macosx-13.5-arm64-cpython-310/h5py/_hl
copying h5py/_hl/files.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/_hl
copying h5py/_hl/compat.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/_hl
copying h5py/_hl/__init__.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/_hl
copying h5py/_hl/selections.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/_hl
copying h5py/_hl/dataset.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/_hl
copying h5py/_hl/vds.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/_hl
copying h5py/_hl/selections2.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/_hl
copying h5py/_hl/group.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/_hl
copying h5py/_hl/datatype.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/_hl
copying h5py/_hl/attrs.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/_hl
copying h5py/_hl/dims.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/_hl
copying h5py/_hl/base.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/_hl
copying h5py/_hl/filters.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/_hl
creating build/lib.macosx-13.5-arm64-cpython-310/h5py/tests
copying h5py/tests/test_dimension_scales.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/tests
copying h5py/tests/test_attribute_create.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/tests
copying h5py/tests/test_file_image.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/tests
copying h5py/tests/conftest.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/tests
copying h5py/tests/test_h5d_direct_chunk.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/tests
copying h5py/tests/test_h5f.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/tests
copying h5py/tests/test_dataset_getitem.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/tests
copying h5py/tests/test_group.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/tests
copying h5py/tests/test_errors.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/tests
copying h5py/tests/test_dataset_swmr.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/tests
copying h5py/tests/test_slicing.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/tests
copying h5py/tests/test_h5pl.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/tests
copying h5py/tests/test_attrs.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/tests
copying h5py/tests/__init__.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/tests
copying h5py/tests/test_attrs_data.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/tests
copying h5py/tests/test_h5t.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/tests
copying h5py/tests/test_big_endian_file.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/tests
copying h5py/tests/test_h5p.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/tests
copying h5py/tests/test_dims_dimensionproxy.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/tests
copying h5py/tests/test_h5o.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/tests
copying h5py/tests/test_datatype.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/tests
copying h5py/tests/common.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/tests
copying h5py/tests/test_dataset.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/tests
copying h5py/tests/test_file.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/tests
copying h5py/tests/test_selections.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/tests
copying h5py/tests/test_dtype.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/tests
copying h5py/tests/test_h5.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/tests
copying h5py/tests/test_file2.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/tests
copying h5py/tests/test_completions.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/tests
copying h5py/tests/test_filters.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/tests
copying h5py/tests/test_base.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/tests
copying h5py/tests/test_objects.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/tests
creating build/lib.macosx-13.5-arm64-cpython-310/h5py/tests/data_files
copying h5py/tests/data_files/__init__.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/tests/data_files
creating build/lib.macosx-13.5-arm64-cpython-310/h5py/tests/test_vds
copying h5py/tests/test_vds/test_highlevel_vds.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/tests/test_vds
copying h5py/tests/test_vds/test_virtual_source.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/tests/test_vds
copying h5py/tests/test_vds/__init__.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/tests/test_vds
copying h5py/tests/test_vds/test_lowlevel_vds.py -> build/lib.macosx-13.5-arm64-cpython-310/h5py/tests/test_vds
copying h5py/tests/data_files/vlen_string_s390x.h5 -> build/lib.macosx-13.5-arm64-cpython-310/h5py/tests/data_files
copying h5py/tests/data_files/vlen_string_dset_utc.h5 -> build/lib.macosx-13.5-arm64-cpython-310/h5py/tests/data_files
copying h5py/tests/data_files/vlen_string_dset.h5 -> build/lib.macosx-13.5-arm64-cpython-310/h5py/tests/data_files
running build_ext
warning: h5py/defs.pxd:15:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:62:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:64:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:66:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:68:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:70:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:72:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:74:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:76:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:78:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:102:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:104:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:106:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:107:4: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:109:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:110:4: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:112:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:114:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:116:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:180:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:197:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:199:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:201:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:203:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:213:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:215:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:229:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:231:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:233:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:235:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:237:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:239:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:241:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:269:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:271:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:273:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:275:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:277:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:279:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:285:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:287:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:289:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:291:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:293:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:295:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:297:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:299:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:333:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:335:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:337:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:339:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:341:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:343:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:345:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:347:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:349:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:383:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:385:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/api_types_hdf5.pxd:48:2: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/api_types_hdf5.pxd:64:2: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/api_types_hdf5.pxd:143:2: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/api_types_hdf5.pxd:148:2: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/api_types_hdf5.pxd:156:2: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/api_types_hdf5.pxd:165:2: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/api_types_hdf5.pxd:198:2: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/api_types_hdf5.pxd:287:2: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/api_types_hdf5.pxd:334:2: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/api_types_ext.pxd:14:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/api_types_ext.pxd:25:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/api_types_ext.pxd:52:4: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/_conv.pyx:161:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/_conv.pyx:422:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/h5r.pxd:17:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
Error compiling Cython file:
------------------------------------------------------------
...
# License: Standard 3-clause BSD; see "license.txt" for full license terms
# and contributor agreement.
from .defs cimport *
from ._objects cimport class ObjectID
^
------------------------------------------------------------
h5py/h5t.pxd:13:23: Expected an identifier
Error compiling Cython file:
------------------------------------------------------------
...
from logging import getLogger
from .h5 import get_config
from .h5r cimport Reference, RegionReference, hobj_ref_t, hdset_reg_ref_t
from .h5t cimport H5PY_OBJ, typewrap, py_create, TypeID, H5PY_PYTHON_OPAQUE_TAG
^
------------------------------------------------------------
h5py/_conv.pyx:21:0: 'h5py/h5t/H5PY_OBJ.pxd' not found
Error compiling Cython file:
------------------------------------------------------------
...
from logging import getLogger
from .h5 import get_config
from .h5r cimport Reference, RegionReference, hobj_ref_t, hdset_reg_ref_t
from .h5t cimport H5PY_OBJ, typewrap, py_create, TypeID, H5PY_PYTHON_OPAQUE_TAG
^
------------------------------------------------------------
h5py/_conv.pyx:21:0: 'h5py/h5t/typewrap.pxd' not found
Error compiling Cython file:
------------------------------------------------------------
...
from logging import getLogger
from .h5 import get_config
from .h5r cimport Reference, RegionReference, hobj_ref_t, hdset_reg_ref_t
from .h5t cimport H5PY_OBJ, typewrap, py_create, TypeID, H5PY_PYTHON_OPAQUE_TAG
^
------------------------------------------------------------
h5py/_conv.pyx:21:0: 'h5py/h5t/py_create.pxd' not found
Error compiling Cython file:
------------------------------------------------------------
...
from logging import getLogger
from .h5 import get_config
from .h5r cimport Reference, RegionReference, hobj_ref_t, hdset_reg_ref_t
from .h5t cimport H5PY_OBJ, typewrap, py_create, TypeID, H5PY_PYTHON_OPAQUE_TAG
^
------------------------------------------------------------
h5py/_conv.pyx:21:0: 'h5py/h5t/TypeID.pxd' not found
Error compiling Cython file:
------------------------------------------------------------
...
from logging import getLogger
from .h5 import get_config
from .h5r cimport Reference, RegionReference, hobj_ref_t, hdset_reg_ref_t
from .h5t cimport H5PY_OBJ, typewrap, py_create, TypeID, H5PY_PYTHON_OPAQUE_TAG
^
------------------------------------------------------------
h5py/_conv.pyx:21:0: 'h5py/h5t/H5PY_PYTHON_OPAQUE_TAG.pxd' not found
Error compiling Cython file:
------------------------------------------------------------
...
void* ptr
cdef int conv_vlen2ndarray(void* ipt,
void* opt,
cnp.dtype elem_dtype,
TypeID intype,
^
------------------------------------------------------------
h5py/_conv.pyx:687:27: 'TypeID' is not a type identifier
Error compiling Cython file:
------------------------------------------------------------
...
cdef int conv_vlen2ndarray(void* ipt,
void* opt,
cnp.dtype elem_dtype,
TypeID intype,
TypeID outtype) except -1:
^
------------------------------------------------------------
h5py/_conv.pyx:688:27: 'TypeID' is not a type identifier
Error compiling Cython file:
------------------------------------------------------------
...
return 0
cdef int conv_ndarray2vlen(void* ipt,
void* opt,
TypeID intype,
^
------------------------------------------------------------
h5py/_conv.pyx:820:27: 'TypeID' is not a type identifier
Error compiling Cython file:
------------------------------------------------------------
...
cdef int conv_ndarray2vlen(void* ipt,
void* opt,
TypeID intype,
TypeID outtype) except -1:
^
------------------------------------------------------------
h5py/_conv.pyx:821:27: 'TypeID' is not a type identifier
Error compiling Cython file:
------------------------------------------------------------
...
:return: error-code
"""
cdef:
int command = cdata[0].command
size_t src_size, dst_size
TypeID supertype
^
------------------------------------------------------------
h5py/_conv.pyx:629:8: 'TypeID' is not a type identifier
Error compiling Cython file:
------------------------------------------------------------
...
"""
cdef:
int command = cdata[0].command
size_t src_size, dst_size
TypeID supertype
TypeID outtype
^
------------------------------------------------------------
h5py/_conv.pyx:630:8: 'TypeID' is not a type identifier
Error compiling Cython file:
------------------------------------------------------------
...
void *bkg_i,
hid_t dxpl) except -1 with gil:
cdef:
int command = cdata[0].command
size_t src_size, dst_size
TypeID supertype
^
------------------------------------------------------------
h5py/_conv.pyx:752:8: 'TypeID' is not a type identifier
Error compiling Cython file:
------------------------------------------------------------
...
hid_t dxpl) except -1 with gil:
cdef:
int command = cdata[0].command
size_t src_size, dst_size
TypeID supertype
TypeID outtype
^
------------------------------------------------------------
h5py/_conv.pyx:753:8: 'TypeID' is not a type identifier
Error compiling Cython file:
------------------------------------------------------------
...
cdef char* ctag = NULL
try:
if H5Tget_class(obj) == H5T_OPAQUE:
ctag = H5Tget_tag(obj)
if ctag != NULL:
if strcmp(ctag, H5PY_PYTHON_OPAQUE_TAG) == 0:
^
------------------------------------------------------------
h5py/_conv.pyx:157:32: 'H5PY_PYTHON_OPAQUE_TAG' is not a constant, variable or function identifier
warning: h5py/_conv.pyx:157:32: Obtaining 'const char *' from externally modifiable global Python value
Error compiling Cython file:
------------------------------------------------------------
...
elif command == H5T_CONV_FREE:
pass
elif command == H5T_CONV_CONV:
# need to pass element dtype to converter
supertype = typewrap(H5Tget_super(src_id))
^
------------------------------------------------------------
h5py/_conv.pyx:645:20: 'typewrap' is not a constant, variable or function identifier
Error compiling Cython file:
------------------------------------------------------------
...
elif command == H5T_CONV_CONV:
# need to pass element dtype to converter
supertype = typewrap(H5Tget_super(src_id))
dt = supertype.dtype
outtype = py_create(dt)
^
------------------------------------------------------------
h5py/_conv.pyx:647:18: 'py_create' is not a constant, variable or function identifier
Error compiling Cython file:
------------------------------------------------------------
...
PyObject *pdata_elem
char* buf = <char*>buf_i
if command == H5T_CONV_INIT:
cdata[0].need_bkg = H5T_BKG_NO
if not H5Tequal(src_id, H5PY_OBJ) or H5Tget_class(dst_id) != H5T_VLEN:
^
------------------------------------------------------------
h5py/_conv.pyx:761:32: 'H5PY_OBJ' is not a constant, variable or function identifier
Error compiling Cython file:
------------------------------------------------------------
...
if command == H5T_CONV_INIT:
cdata[0].need_bkg = H5T_BKG_NO
if not H5Tequal(src_id, H5PY_OBJ) or H5Tget_class(dst_id) != H5T_VLEN:
return -2
supertype = typewrap(H5Tget_super(dst_id))
^
------------------------------------------------------------
h5py/_conv.pyx:763:20: 'typewrap' is not a constant, variable or function identifier
Error compiling Cython file:
------------------------------------------------------------
...
return -2
supertype = typewrap(H5Tget_super(dst_id))
for i in range(nl):
# smells a lot
memcpy(&pdata_elem, pdata+i, sizeof(pdata_elem))
if supertype != py_create((<cnp.ndarray> pdata_elem).dtype, 1):
^
------------------------------------------------------------
h5py/_conv.pyx:767:28: 'py_create' is not a constant, variable or function identifier
Error compiling Cython file:
------------------------------------------------------------
...
if nl == 0:
return 0
# need to pass element dtype to converter
pdata_elem = pdata[0]
supertype = py_create((<cnp.ndarray> pdata_elem).dtype)
^
------------------------------------------------------------
h5py/_conv.pyx:784:20: 'py_create' is not a constant, variable or function identifier
Error compiling Cython file:
------------------------------------------------------------
...
return 0
# need to pass element dtype to converter
pdata_elem = pdata[0]
supertype = py_create((<cnp.ndarray> pdata_elem).dtype)
outtype = typewrap(H5Tget_super(dst_id))
^
------------------------------------------------------------
h5py/_conv.pyx:785:18: 'typewrap' is not a constant, variable or function identifier
Error compiling Cython file:
------------------------------------------------------------
...
enum = H5Tenum_create(H5T_STD_I32LE)
vlentype = H5Tvlen_create(H5T_STD_I32LE)
pyobj = H5PY_OBJ
^
------------------------------------------------------------
h5py/_conv.pyx:894:12: 'H5PY_OBJ' is not a constant, variable or function identifier
Loading library to get build settings and version: /opt/homebrew/Cellar/hdf5/1.14.3_1/lib/libhdf5.dylib
********************************************************************************
Summary of the h5py configuration
HDF5 include dirs: [
'/opt/homebrew/Cellar/hdf5/1.14.3_1/include'
]
HDF5 library dirs: [
'/opt/homebrew/Cellar/hdf5/1.14.3_1/lib'
]
HDF5 Version: (1, 14, 3)
MPI Enabled: False
ROS3 VFD Enabled: False
Rebuild Required: True
********************************************************************************
Executing api_gen rebuild of defs
Executing cythonize()
[ 1/24] Cythonizing /private/var/folders/7r/d08538nj63ncgxpk9jwhpxsc0000gp/T/pip-install-71dv4mke/h5py_fda1489589c54f57b0ddefc02e45f9d9/h5py/_conv.pyx
Traceback (most recent call last):
File "/Users/username/src/evogym/env-evogym/lib/python3.10/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 353, in <module>
main()
File "/Users/username/src/evogym/env-evogym/lib/python3.10/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 335, in main
json_out['return_val'] = hook(**hook_input['kwargs'])
File "/Users/username/src/evogym/env-evogym/lib/python3.10/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 251, in build_wheel
return _build_backend().build_wheel(wheel_directory, config_settings,
File "/private/var/folders/7r/d08538nj63ncgxpk9jwhpxsc0000gp/T/pip-build-env-dbh4er50/overlay/lib/python3.10/site-packages/setuptools/build_meta.py", line 421, in build_wheel
return self._build_with_temp_dir(
File "/private/var/folders/7r/d08538nj63ncgxpk9jwhpxsc0000gp/T/pip-build-env-dbh4er50/overlay/lib/python3.10/site-packages/setuptools/build_meta.py", line 403, in _build_with_temp_dir
self.run_setup()
File "/private/var/folders/7r/d08538nj63ncgxpk9jwhpxsc0000gp/T/pip-build-env-dbh4er50/overlay/lib/python3.10/site-packages/setuptools/build_meta.py", line 318, in run_setup
exec(code, locals())
File "<string>", line 104, in <module>
File "/private/var/folders/7r/d08538nj63ncgxpk9jwhpxsc0000gp/T/pip-build-env-dbh4er50/overlay/lib/python3.10/site-packages/setuptools/__init__.py", line 117, in setup
return distutils.core.setup(**attrs)
File "/private/var/folders/7r/d08538nj63ncgxpk9jwhpxsc0000gp/T/pip-build-env-dbh4er50/overlay/lib/python3.10/site-packages/setuptools/_distutils/core.py", line 183, in setup
return run_commands(dist)
File "/private/var/folders/7r/d08538nj63ncgxpk9jwhpxsc0000gp/T/pip-build-env-dbh4er50/overlay/lib/python3.10/site-packages/setuptools/_distutils/core.py", line 199, in run_commands
dist.run_commands()
File "/private/var/folders/7r/d08538nj63ncgxpk9jwhpxsc0000gp/T/pip-build-env-dbh4er50/overlay/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 954, in run_commands
self.run_command(cmd)
File "/private/var/folders/7r/d08538nj63ncgxpk9jwhpxsc0000gp/T/pip-build-env-dbh4er50/overlay/lib/python3.10/site-packages/setuptools/dist.py", line 950, in run_command
super().run_command(command)
File "/private/var/folders/7r/d08538nj63ncgxpk9jwhpxsc0000gp/T/pip-build-env-dbh4er50/overlay/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 973, in run_command
cmd_obj.run()
File "/private/var/folders/7r/d08538nj63ncgxpk9jwhpxsc0000gp/T/pip-build-env-dbh4er50/overlay/lib/python3.10/site-packages/setuptools/command/bdist_wheel.py", line 398, in run
self.run_command("build")
File "/private/var/folders/7r/d08538nj63ncgxpk9jwhpxsc0000gp/T/pip-build-env-dbh4er50/overlay/lib/python3.10/site-packages/setuptools/_distutils/cmd.py", line 316, in run_command
self.distribution.run_command(command)
File "/private/var/folders/7r/d08538nj63ncgxpk9jwhpxsc0000gp/T/pip-build-env-dbh4er50/overlay/lib/python3.10/site-packages/setuptools/dist.py", line 950, in run_command
super().run_command(command)
File "/private/var/folders/7r/d08538nj63ncgxpk9jwhpxsc0000gp/T/pip-build-env-dbh4er50/overlay/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 973, in run_command
cmd_obj.run()
File "/private/var/folders/7r/d08538nj63ncgxpk9jwhpxsc0000gp/T/pip-build-env-dbh4er50/overlay/lib/python3.10/site-packages/setuptools/_distutils/command/build.py", line 135, in run
self.run_command(cmd_name)
File "/private/var/folders/7r/d08538nj63ncgxpk9jwhpxsc0000gp/T/pip-build-env-dbh4er50/overlay/lib/python3.10/site-packages/setuptools/_distutils/cmd.py", line 316, in run_command
self.distribution.run_command(command)
File "/private/var/folders/7r/d08538nj63ncgxpk9jwhpxsc0000gp/T/pip-build-env-dbh4er50/overlay/lib/python3.10/site-packages/setuptools/dist.py", line 950, in run_command
super().run_command(command)
File "/private/var/folders/7r/d08538nj63ncgxpk9jwhpxsc0000gp/T/pip-build-env-dbh4er50/overlay/lib/python3.10/site-packages/setuptools/_distutils/dist.py", line 973, in run_command
cmd_obj.run()
File "/private/var/folders/7r/d08538nj63ncgxpk9jwhpxsc0000gp/T/pip-install-71dv4mke/h5py_fda1489589c54f57b0ddefc02e45f9d9/setup_build.py", line 170, in run
self.extensions = cythonize(self._make_extensions(config),
File "/private/var/folders/7r/d08538nj63ncgxpk9jwhpxsc0000gp/T/pip-build-env-dbh4er50/overlay/lib/python3.10/site-packages/Cython/Build/Dependencies.py", line 1154, in cythonize
cythonize_one(*args)
File "/private/var/folders/7r/d08538nj63ncgxpk9jwhpxsc0000gp/T/pip-build-env-dbh4er50/overlay/lib/python3.10/site-packages/Cython/Build/Dependencies.py", line 1321, in cythonize_one
raise CompileError(None, pyx_file)
Cython.Compiler.Errors.CompileError: /private/var/folders/7r/d08538nj63ncgxpk9jwhpxsc0000gp/T/pip-install-71dv4mke/h5py_fda1489589c54f57b0ddefc02e45f9d9/h5py/_conv.pyx
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
ERROR: Failed building wheel for h5py
Failed to build h5py
ERROR: Could not build wheels for h5py, which is required to install pyproject.toml-based projects
以下の記事の解決策に従う。
2つ目の記事の「h5pyのインストールに失敗する」の項によると、「Cython==3.0.4」なら動くらしいので、これを入れておく。
requirements.txt
Cython==3.0.4
h5py==3.10.0
これでインストールできたよ。
3-2-3. PyOpenGL-accelerate
PyOpenGL-accelerate のインストールでエラー。
試しに、直接 pip install してみても、
% pip install PyOpenGL-accelerate
エラーが発生し、中でも以下の部分が原因のように見えて気になったので調べてみると、
src/numpy_formathandler.pyx:22:42: 'Py_intptr_t' is not a type identifier
以下の issue で解決策が示されていた。
直接 GitHub リポジトリから pip install する手順を stackoverflow で調べて...
以下のように修正。
requirements.txt
# PyOpenGL==3.1.5
# PyOpenGL-accelerate==3.1.5
PyOpenGL @ git+https://github.com/mcfletch/pyopengl.git@release-3.1.8#egg=PyOpenGL
PyOpenGL_accelerate @ git+https://github.com/mcfletch/pyopengl.git@release-3.1.8#egg=PyOpenGL_accelerate&subdirectory=accelerate
再度 pip install したらうまくいった。
4. 最終 requirements.txt
OpenEndedCodebook の方の pip install も終えた後に確認したところ、以下のモジュールがインストールされた状態になっていました。
$ pip freeze
cloudpickle==3.0.0
cycler==0.12.1
Cython==3.0.4
decorator==5.1.1
# evogym のインストール先は、マシンによって違うと思います
# evogym @ file:///Users/username/src/evogym
fonttools==4.54.1
glfw==2.5.0
GPy==1.10.0
GPyOpt==1.2.6
gym==0.22.0
gym-notices==0.0.8
h5py==3.10.0
imageio==2.14.1
kiwisolver==1.4.7
matplotlib==3.5.1
neat-python==0.92
networkx==2.8.2
numpy==1.21.5
opencv-python==4.5.5.62
packaging==24.1
pandas==2.0.3
paramz==0.9.6
Pillow==9.0.0
pybind11==2.9.0
pygifsicle==1.0.5
PyOpenGL @ git+https://github.com/mcfletch/pyopengl.git@41105583e27264f8e01fb0b711ca8e44ac444f56
PyOpenGL-accelerate @ git+https://github.com/mcfletch/pyopengl.git@41105583e27264f8e01fb0b711ca8e44ac444f56#subdirectory=accelerate
pyparsing==3.1.4
python-dateutil==2.9.0.post0
pytz==2024.2
scipy==1.10.1
six==1.16.0
torch==1.12.1
ttkbootstrap==1.5.1
typing==3.7.4.3
typing_extensions==4.12.2
tzdata==2024.2
お役に立てますと幸いです^^
おまけ
一度 pip install に成功しても、PC消して再度作業しようとした時、やり方がわからなくなったりしますよね。
その時は、以下の記事の頭の方に仮想環境の起動方法が書いてあるので、参考にして下さいね^^
それでは、良いコーディングを(*˘︶˘*).｡.:*