1. 概要
MKLをリンクしたScipyを使用するためビルドしようとしたら以下のエラーが出たが、openblas-devをインストールしたらビルドに成功した。
../../scipy/meson.build:131:0: ERROR: Dependency "OpenBLAS" not found, tried pkgconfig and cmake
2. 実行環境
- Ubuntu 22.04.1 LTS on WSL2
- Python 3.10.6
3. 内容
MKLをリンクしたNumpy、Scipyを使用するために、いつも両パッケージをビルドしてインストールしている（参考NumPy/SciPy で Intel MKL を利用する (2019年11月版)）。最近Ubuntuのバージョンを20.04から22.04へとアップグレードしたのに伴って、Pythonのバージョンが3.8から3.10に変更された。そこでパッケージをインストールし直していたのだが、Scipyのビルドでエラーが発生したため、その対処法を書き残しておく。
3.1 実行コマンド・エラー出力
(venv310) user@host:~$ pip install scipy
Collecting scipy
Using cached scipy-1.9.3.tar.gz (42.1 MB)
Installing build dependencies ... done
Getting requirements to build wheel ... error
error: subprocess-exited-with-error
× Getting requirements to build wheel did not run successfully.
│ exit code: 1
╰─> [67 lines of output]
The Meson build system
Version: 0.63.3
Source dir: /tmp/pip-install-zvhwhcu_/scipy_5691822260404182a10d4f24cb2ebe05
Build dir: /tmp/pip-install-zvhwhcu_/scipy_5691822260404182a10d4f24cb2ebe05/.mesonpy-ujapjd7b/build
Build type: native build
Project name: SciPy
Project version: 1.9.3
C compiler for the host machine: cc (gcc 11.3.0 "cc (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0")
C linker for the host machine: cc ld.bfd 2.38
C++ compiler for the host machine: c++ (gcc 11.3.0 "c++ (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0")
C++ linker for the host machine: c++ ld.bfd 2.38
Host machine cpu family: x86_64
Host machine cpu: x86_64
Compiler for C supports arguments -Wno-unused-but-set-variable: YES
Compiler for C supports arguments -Wno-unused-but-set-variable: YES (cached)
Compiler for C supports arguments -Wno-unused-function: YES
Compiler for C supports arguments -Wno-conversion: YES
Compiler for C supports arguments -Wno-misleading-indentation: YES
Compiler for C supports arguments -Wno-incompatible-pointer-types: YES
Library m found: YES
Fortran compiler for the host machine: gfortran (gcc 11.3.0 "GNU Fortran (Ubuntu 11.3.0-1ubuntu1~22.04) 11.3.0")
Fortran linker for the host machine: gfortran ld.bfd 2.38
Compiler for Fortran supports arguments -Wno-conversion: YES
Program cython found: YES (/tmp/pip-build-env-jwrxnkd1/overlay/bin/cython)
Program pythran found: YES (/tmp/pip-build-env-jwrxnkd1/overlay/bin/pythran)
Program cp found: YES (/usr/bin/cp)
Program python found: YES (/home/user/.virtualenvs/venv310/bin/python3)
Found pkg-config: /usr/bin/pkg-config (0.29.2)
Run-time dependency threads found: YES
Library npymath found: YES
Library npyrandom found: YES
Found CMake: /usr/bin/cmake (3.22.1)
Run-time dependency openblas found: NO (tried pkgconfig and cmake)
Run-time dependency openblas found: NO (tried pkgconfig and cmake)
../../scipy/meson.build:131:0: ERROR: Dependency "OpenBLAS" not found, tried pkgconfig and cmake
A full log can be found at /tmp/pip-install-zvhwhcu_/scipy_5691822260404182a10d4f24cb2ebe05/.mesonpy-ujapjd7b/build/meson-logs/meson-log.txt
+ meson setup --native-file=/tmp/pip-install-zvhwhcu_/scipy_5691822260404182a10d4f24cb2ebe05/.mesonpy-native-file.ini -Ddebug=false -Doptimization=2 --prefix=/usr /tmp/pip-install-zvhwhcu_/scipy_5691822260404182a10d4f24cb2ebe05 /tmp/pip-install-zvhwhcu_/scipy_5691822260404182a10d4f24cb2ebe05/.mesonpy-ujapjd7b/build
Traceback (most recent call last):
File "/home/user/.virtualenvs/venv310/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 351, in <module>
main()
File "/home/user/.virtualenvs/venv310/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 333, in main
json_out['return_val'] = hook(**hook_input['kwargs'])
File "/home/user/.virtualenvs/venv310/lib/python3.10/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 118, in get_requires_for_build_wheel
return hook(config_settings)
File "/tmp/pip-build-env-jwrxnkd1/overlay/lib/python3.10/site-packages/mesonpy/__init__.py", line 969, in get_requires_for_build_wheel
with _project(config_settings) as project:
File "/usr/lib/python3.10/contextlib.py", line 135, in __enter__
return next(self.gen)
File "/tmp/pip-build-env-jwrxnkd1/overlay/lib/python3.10/site-packages/mesonpy/__init__.py", line 948, in _project
with Project.with_temp_working_dir(
File "/usr/lib/python3.10/contextlib.py", line 135, in __enter__
return next(self.gen)
File "/tmp/pip-build-env-jwrxnkd1/overlay/lib/python3.10/site-packages/mesonpy/__init__.py", line 777, in with_temp_working_dir
yield cls(source_dir, tmpdir, build_dir)
File "/tmp/pip-build-env-jwrxnkd1/overlay/lib/python3.10/site-packages/mesonpy/__init__.py", line 682, in __init__
self._configure(reconfigure=bool(build_dir) and not native_file_mismatch)
File "/tmp/pip-build-env-jwrxnkd1/overlay/lib/python3.10/site-packages/mesonpy/__init__.py", line 713, in _configure
self._meson(
File "/tmp/pip-build-env-jwrxnkd1/overlay/lib/python3.10/site-packages/mesonpy/__init__.py", line 696, in _meson
return self._proc('meson', *args)
File "/tmp/pip-build-env-jwrxnkd1/overlay/lib/python3.10/site-packages/mesonpy/__init__.py", line 691, in _proc
subprocess.check_call(list(args))
File "/usr/lib/python3.10/subprocess.py", line 369, in check_call
raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['meson', 'setup', '--native-file=/tmp/pip-install-zvhwhcu_/scipy_5691822260404182a10d4f24cb2ebe05/.mesonpy-native-file.ini', '-Ddebug=false', '-Doptimization=2', '--prefix=/usr', '/tmp/pip-install-zvhwhcu_/scipy_5691822260404182a10d4f24cb2ebe05', '/tmp/pip-install-zvhwhcu_/scipy_5691822260404182a10d4f24cb2ebe05/.mesonpy-ujapjd7b/build']' returned non-zero exit status 1.
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
error: subprocess-exited-with-error
× Getting requirements to build wheel did not run successfully.
│ exit code: 1
╰─> See above for output.
note: This error originates from a subprocess, and is likely not a problem with pip.
3.2 解決策
libopenblas-devをインストールする。
user@host:~$ sudo apt install libopenblas-dev
下記ページによるとビルドする際に使うのがnumpy.distutilsからMesonに変更されて、依存関係を探すのがパスのハードコートからpkg-config経由に変わったかららしい。