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jupyter/r-notebook で devtools::install_github() すると Installation failed: error in running command でコケる

hoxo-m 氏の pforeach を docker コンテナ jupyter/r-notebook:c54800018c2c でインストールしようとしたら tarball の展開でコケた…。Jupyter Project が提供する立派な公式コンテナなのに…。


  1. options(unzip = 'internal') する
  2. Sys.setenv(TAR = "/bin/tar") する
> install.packages("devtools", repos="https://cran.ism.ac.jp/") # 統数研に感謝
> getOption('unzip') # 
> options(unzip = 'internal')
> getOption('unzip')
> Sys.getenv("TAR")
> Sys.setenv(TAR = "/bin/tar") # https://github.com/conda-forge/r-devtools-feedstock/issues/4
> Sys.getenv("TAR")

コンテナとか Jupyter の問題というより conda で作った環境の問題っぽい?。jupyter/r-notebook に gtar とか入っとらん。



  1. Jupyter notebook official r-notebook container: https://hub.docker.com/r/jupyter/r-notebook/
  2. hoxo-m/pforeach: https://github.com/hoxo-m/pforeach
  3. R で超簡単に並列処理を書けるパッケージ pforeach を作った: http://d.hatena.ne.jp/hoxo_m/20141222/p1
  4. 'unzip' must be a single character string when calling install_github: https://github.com/r-lib/devtools/issues/406
  5. install_github fails in conda environment on Linux: https://github.com/conda-forge/r-devtools-feedstock/issues/4


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