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fdrtool メモ

Last updated at 2012-12-26Posted at 2012-04-12

fdrsample.R

  library("fdrtool");
  p.adj <- p.adjust(p.values, "fdr");
  fdr <- fdrtool(p.values, statistic = "pvalue", plot = TRUE);
  fdrs <- cbind(p.adj, fdr$qval, fdr$lfdr);
  colnames(fdrs) <- c("adjusted p(BH)", "tail area-based Fdr", "density-based fdr(local fdr)");
  write.table(fdrs, "fdrDemo.txt", quote = FALSE, row.names = FALSE, sep = "\t");

参考：
http://cran.r-project.org/web/packages/fdrtool/index.html
http://mametalk.blog32.fc2.com/blog-entry-28.html

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