概要
複数のfastqを一つのfastqにまとめるスクリプト。
参照:https://www.biostars.org/p/68477/
スクリプト
#!/bin/bash
$list = "sample.list"
$out = "merged.fq"
for i in `cat $list`
do
cat ${i}.fq | awk -v name="${i}" '{print (NR%4 == 1) ? "@name." ++i : $0}' >> $out
done
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複数のfastqを一つのfastqにまとめるスクリプト。
参照:https://www.biostars.org/p/68477/
#!/bin/bash
$list = "sample.list"
$out = "merged.fq"
for i in `cat $list`
do
cat ${i}.fq | awk -v name="${i}" '{print (NR%4 == 1) ? "@name." ++i : $0}' >> $out
done
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